Pseudochaenichthys georgianus (South Georgia icefish): 117466304
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Entry
117466304 CDS
T09629
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pgeo04040
]
117466304 (scn1laa)
Ion channels [BR:
pgeo04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117466304 (scn1laa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
Zip
ATP-synt_B
PFF1_TM
FUT8_N_cat
RUFY4
Motif
Other DBs
NCBI-GeneID:
117466304
NCBI-ProteinID:
XP_033965371
LinkDB
All DBs
Position
21:complement(23351057..23373570)
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AA seq
1853 aa
AA seq
DB search
MCTILANCVYMTRSHLPEWAKNVEYTFTAIYTLESLIKILARGFCIGKFTFLRDPWNWLD
FSVIVLAYVTEFVTLGNFSALRTFRVLRAFKAISVIPGLKTIVGALFQSVKKLANVMILT
VFCLSVFALVGLQLFMGNLKHKCVRDYNITLYNRTNMTETEYGNFSEAIYLLDKRFYYVL
PGKKDALLCGFSSVAGQCPEGFHCKKTGRNPDYNYTSFDSFGWAFLSLFRLMTQDYWETL
YQQTLRAAGKPYMFFFVLVIFLGSFYLINLILAVVAMAYEEQSQATIKEAKEKEEEFKAM
IEQLKRQQEDAQAAATAEAAERGEASDKPSGPESSSDSKLSSKSAKERRNRRKKRQDDGK
GDDKKVSQSESQDSIKKGRCRFSVDANQLNYDMKCSPTHQVQYNLPSFLSFRGPMFSSRR
NSRTSIVSFRSQAQDVSSENEFADDENSIFEDTLSRRGSLFFPRTSDRRSSSMSFLSHLL
LPPNGIKHSSVDCNGVVSLVGGNSHSLSPVELLLPKVTVDMAFTGDHADTTDTEYRPGGG
ADHECIDFLDGPEARQRALSTASVITSTVEELEELRQKCPPCWYNFANTFLIWECCPRWL
RIKRKVKLVVMDPFTDLTITICIVLNTLFMAMEHYQMSLGFRNMLDVGNLIFTSIFTAEM
VFKIIAMDPYYYFQEKWNIFDSIIVSLSLMELGLENVNGMSVLRSFRLMRVFKLAKSWPT
LNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKHYKDCVCKISENCILPRWHMN
DFFHSFLIVFRVLCGEWIETMWDCMEVAGTTKCIIVYMMVLVIGNLVLLNLFLALLLSSF
SSDNIAGVEDDTDMNNFQVAIGRIHNGIAFVKSLLRSSCNSVCLRRKKGEDKTLDELHKP
LGPNGVPNHTIKDFSKNGNGDVTGVDKNGDKYIVSSKSDDSIMSFIHNPSLTVTVPIALG
ESDFENLNTEDFSSLSSDIVGCPEIVEDDDQVSSSEGSTIDGLPGGEGVESVDFESEEFA
EPDACFPDRCVRKYQCCQVNVEVGWWKVWWTLRKTCFRIVEHNWFESFIIFMILLSSGAL
AFEDIYIEQRKTIKTMLEFADKIFTYIFILEMLLKWVAYGYAKYFTNAWCWLDFLIVDVS
VVSMVANAMGYSELGAIKSLRTLRALRPLRALSRFDGMRVVVNALLGAIPSIFNVLLVCL
IFWLIFSIMGVNLFAGKFGYCVNKTTNEELPISKVTNKSDCDKMDDARWKIHKVNFDNVG
MGYLALLQVATFKGWMEIMYAAVDSRNEDEQPDYEYNLNMYWFFVVFIIFGAFFALNLFI
GVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPSNQIQGYVFDFTT
KQAFDILIMVLIWLNMVTMMVETEDQSEGKKQVLYWINLVFVIIFTGECLLKMIALRQYY
FTNGWNVFDFIVVVLSIIGMCLSELIEKYFVSPTLFRVIRLARIGRVLRLIKSAKGIRTL
LFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGIDDLFNFETFANSMICLFQ
ITTSAGWDGLLAPILNKHEDDCDHSTEHPGSDIKGDCGNPPVGIAFFVSYIIICFLVVIN
MYIAVILENFGVATEESADPLSEDDFETFYEVWERFDPHATQFMEYKKLSEFADALDPPL
RIPMPNKMVLISMDLPMVNGERIHCLDILFAFTKRVLGEDGEMDILRGQMEERFMASNPS
KVSYEPITTTLRRKQEDTSAVVIQRAYRNYARSRVFLKPSNRSGVNIQRDGTHIDKEDVV
TDKLQDISGADKSELTPSAALQPSSNSVTSNGRHKYEKDKSEKEVEGKDVREQ
NT seq
5562 nt
NT seq
+upstream
nt +downstream
nt
atgtgcactatcctcgccaactgtgtgtatatgacacggagccatctgcctgagtgggca
aagaatgtagaatacacatttactgcaatctatacacttgaatccctcataaaaatctta
gcccgagggttctgtattgggaagttcacgtttctaagagatccctggaactggctggat
tttagtgtcattgtgttggcgtatgtaacagagtttgtaaccctaggcaacttttcagct
cttcgcacattcagagtgctgagagcatttaaagctatttcggtaatcccaggcctgaaa
accattgttggagcattgttccagtcagtgaagaagctcgccaatgtgatgattctcacc
gtcttctgcttgagcgtcttcgccctcgtaggactacaactgtttatgggcaatttaaaa
cacaaatgtgtccgggactataatattacactttataatcggaccaatatgactgaaaca
gagtatggcaatttctcagaggctatctacctgctagataagcgtttttactatgtcctt
ccaggtaaaaaagatgcattgctttgtggatttagcagtgtagctgggcagtgcccagag
gggttccattgcaaaaaaacaggaagaaatccagactataattacaccagttttgactcc
tttggttgggcctttctctctctgtttagactgatgacgcaggattactgggagactctt
taccagcagacattgcgagcagctgggaagccctacatgttcttttttgtgctggtgatt
ttcctcggttccttttatctgatcaacctgatcttggctgtagtagctatggcctacgag
gagcagagccaagccaccataaaggaggcgaaggagaaggaggaagagtttaaggccatg
atagagcagctgaaacggcagcaagaggacgctcaggcagcagcaactgcagaggctgca
gagagaggcgaggccagtgataaacccagtggcccggagagctcttctgactctaagctc
agctcaaaaagcgccaaagagagacgcaacagaaggaaaaaaaggcaggatgatggcaaa
ggggatgacaagaaggtatctcaatccgagtcgcaggacagtattaagaaaggtcgctgc
cgcttctctgtggatgcaaaccagctcaactatgacatgaaatgctcccccacgcatcag
gttcagtataatctgccatcctttctgagtttccgtggacccatgttctcgtccagacgg
aatagtaggaccagcattgtcagtttccgaagccaagcgcaggatgtgagctcagaaaat
gaatttgctgatgacgagaacagcatttttgaggacaccctaagtcgaaggggctctttg
ttttttccccggactagtgatcgacgcagcagcagtatgagcttcttgtcacatctccta
cttccaccaaatgggatcaagcacagctctgtagactgcaatggggttgtgtctctggtg
ggtgggaattcacactcactgtcacctgtggagctacttctgcccaaagtgacggtagat
atggccttcacaggagaccacgctgacaccactgacacagaatacagaccgggtggagga
gcagaccatgagtgtattgacttccttgatggcccagaggctagacagagagctctcagt
acagccagtgtcataactagcacagtggaagagcttgaagagttgaggcagaagtgtcct
ccttgctggtacaattttgccaacactttcctcatctgggagtgttgtccgagatggttg
aggatcaagaggaaggttaaactagttgtgatggaccccttcacggacctaaccatcacc
atctgcattgtgctcaacacattgtttatggccatggagcattatcaaatgtctctaggt
ttccgcaacatgctggatgtgggaaatttgatttttactagcatcttcacggcagaaatg
gtcttcaagatcattgctatggacccatactattacttccaggagaaatggaatattttt
gattcaatcattgtcagtttgagcttgatggagctgggcttggaaaacgtgaatggcatg
tctgttctgagatcattcagattgatgagagtattcaagttggctaaatcatggcccact
cttaacacactaatcaagataattggcaattcagtgggggctttgggcaatctgacgctg
gtgctggccattatcgtcttcatttttgcagttgtgggcatgcaactgtttggaaaacat
tacaaggactgtgtgtgtaaaatctctgaaaactgcattctgccccgttggcacatgaac
gacttcttccattcatttctcattgtgttccgagtgctttgtggagagtggatagaaacc
atgtgggactgtatggaggtggctgggacaaccaagtgcatcattgtctacatgatggtc
ttggttattggaaaccttgtgttgctgaatctgttcctggccctgctgctgagttcattc
agttctgataacatcgcgggggtagaggacgacacagacatgaacaattttcaggttgcc
attggaagaattcacaatggcatagccttcgtcaagtccctgcttcgaagcagctgcaat
agtgtctgtctcaggaggaagaagggtgaagacaaaaccctggatgagctccacaaacct
ttagggccaaatggtgtccccaaccataccatcaaagacttttctaagaatggaaatggg
gatgtgaccggagtggacaaaaatggagacaagtacatagtcagtagcaagagtgatgat
tccattatgtctttcattcacaaccctagtctgactgtcactgttcctattgctctggga
gaatcagactttgaaaacctcaacacagaggacttcagcagtctctcatctgatatagta
ggctgccctgagattgtggaagatgatgaccaagtcagctcctcagaggggagtacaata
gacggtttgccaggcggggagggagtagagtctgtggactttgaatcggaagaatttgct
gaacctgatgcctgctttcctgacaggtgtgtgcgaaagtaccagtgttgtcaagtaaat
gtggaagtgggctggtggaaggtgtggtggacgcttagaaagacttgtttccggatcgtg
gagcacaactggtttgagagcttcatcattttcatgatcctgctcagcagtggagcactg
gcatttgaggacatctacattgagcagaggaagaccattaaaacgatgttggagtttgcg
gacaaaatcttcacctacatcttcattctggagatgttactgaagtgggtggcctatgga
tatgccaagtattttacaaatgcctggtgctggctagacttcctcattgtcgatgtctca
gtggtcagtatggtagccaatgccatgggatattctgaacttggtgccatcaagtctctg
agaacccttcgagctctgaggccactgagagccctgtctcggtttgacggcatgagggtg
gtggtcaatgccctgcttggagcaattccttccatcttcaatgtgctgctggtttgtctc
atcttctggctcatcttcagcatcatgggagtaaacttatttgcggggaagttcggctat
tgtgtcaacaaaaccacaaatgaagagttacctatatcaaaggtgacaaacaagtcagac
tgtgacaaaatggacgatgctcgttggaagatccacaaagtcaacttcgacaatgttggt
atgggataccttgcattgctgcaagtggctacattcaagggctggatggaaatcatgtat
gctgctgtggactctcgaaacgaggatgaacaaccagattatgagtacaacctgaacatg
tactggttttttgttgttttcatcatatttggagccttcttcgctctcaatctcttcatt
ggtgtcatcatagacaacttcaatcagcaaaagaaaaagtttggaggtcaagacatcttc
atgactgaagaacagaagaaatactacaatgccatgaaaaagctggggtcaaagaaacca
caaaagccgattcctagaccatcaaaccaaattcaaggatatgtctttgacttcaccaca
aaacaagcattcgatattttaataatggttctaatatggcttaatatggtaaccatgatg
gtagaaactgaagaccagtcagaaggaaaaaaacaagttctttactggatcaatctagta
ttcgttattatctttactggagagtgtttgttgaagatgatcgcgcttcgccaatactac
ttcacaaatggttggaatgtatttgacttcatcgtcgtcgtcctgtcaatcatcggaatg
tgtctctcggaactgatagagaagtattttgtttcgccaaccttgttcagagtcatccga
ttggctcggattggccgtgtgctccgccttattaaaagtgccaaaggaattcgcacactc
ttgtttgccttgatgatgtcacttcctgccttgttcaacattggtctcttgctctttttg
gtgatgttcatctatgctatcttcggcatgtcaaacttcgcttacgtcaagaaggaagca
ggcattgatgaccttttcaattttgagacatttgccaacagcatgatctgtttgttccag
atcaccacctcagcggggtgggatggccttcttgcgcccattctcaacaaacatgaagat
gattgtgaccattccacagagcatcctggcagtgatattaagggagactgtggaaatccc
cctgtgggcatcgccttctttgtgagctacatcatcatctgtttcctggttgtgataaat
atgtacattgctgttatcctggaaaacttcggtgtggccactgaggagagcgccgaccca
ctaagtgaggatgattttgaaacgttttacgaggtctgggaaaggtttgatcctcatgca
acacagttcatggagtacaaaaagctttcagaatttgcagatgctctggacccaccgtta
cgtatacccatgcctaacaagatggtactgatctctatggatctacccatggtgaatggt
gaacgcattcactgcctggacattctgtttgcattcacaaaacgtgttcttggtgaagat
ggggagatggacatcctaagggggcagatggaggagcgattcatggcctccaatccttcc
aaagtttcctatgaaccaatcactaccaccctccgtcgcaaacaggaggacacatcagcc
gttgtcatccagagagcatacagaaattatgcaaggagccgtgttttcctgaagccctca
aacagatctggtgttaacattcaaagggatggaacacacattgacaaagaggatgttgtc
accgacaaactccaagacatttctggcgccgataaaagtgaactgacaccttcagcggcc
cttcagccttcaagtaacagtgtgacttcaaatggaagacacaaatatgaaaaagacaaa
agtgaaaaggaggttgagggcaaagatgtcagagagcaatag
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integrated database retrieval system
