Pseudomonas germanica: J0G10_27765
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Entry
J0G10_27765 CDS
T08191
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pgf
Pseudomonas germanica
Pathway
pgf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pgf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J0G10_27765 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgf03021
]
J0G10_27765 (rpoB)
03400 DNA repair and recombination proteins [BR:
pgf03400
]
J0G10_27765 (rpoB)
Enzymes [BR:
pgf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J0G10_27765 (rpoB)
Transcription machinery [BR:
pgf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J0G10_27765 (rpoB)
DNA repair and recombination proteins [BR:
pgf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J0G10_27765 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QYY81465
UniProt:
A0ABX8YNF4
LinkDB
All DBs
Position
complement(6241311..6245384)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFKLSGET
LSLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGIKTLEVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEVLAKIAKAGVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVTDEIVFLSAIEEADHVIAQASATMNDQKVLIDELVAVRHLNEFTVKAPEEVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMVEEQRKVAELRTFLDEIYNQIGGRNEDLDSFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccttacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtattgcgcggtgtaactttcgccgtacctttg
cgggtaaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gtaatcaacggtaccgagcgtgtaatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgcggcaagacgcatagctccggcaaactgctgtactccgcgcgcatc
attccttaccgcggttcgtggctggacttcgagttcgacccgaaagactgcgtgttcgtg
cgtatcgaccgtcgtcgcaagctgccggcatcggtactgctgcgcgcgctcggttacacc
actgaagaagtgctggacgcgttctacaccaccaacgtcttcaagctgagcggcgaaacc
ctcagcctggaactgattgcttcgcgtctgcgtggtgaaattgcggttctggacattcag
gacgagaagggcaaggtcattgttgaagcgggccgccgtattaccgcgcgccacatcaac
cagatcgaaaaagccggcatcaagactctggaagtacctctggactacgtcctgggccgt
actaccgccaaggtcatcgtgcacccggctaccggcgaaatcctggcagagtgcaacacc
gagctgaacactgaagtcctggcaaaaattgccaaggctggtgttgttcgcatcgaaacg
ctgtacaccaacgatatcgactgcggtccgttcgtctccgacacgctgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtccaggcgagccg
ccaaccaaagacgctgccgaaaccctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgtcgcggtactgaagactctggtcgacatc
cgtaacggtaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgaaatggccgagaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctctcgcagttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgtcgtgtctccgcactcggccct
ggcggtctgactcgtgagcgcgcaggctttgaagtccgtgacgtgcacccgactcactac
ggtcgtgtatgcccgatcgaaacgccggaaggtccgaacattggtctgatcaactccttg
gctgcttacgctcgcaccaaccagtacggcttcctggaaagcccgtaccgcgtggtgaaa
gagggtgtggtcaccgacgagatcgtgttcctgtccgctattgaagaagccgatcacgtg
atcgcgcaggcttcggcgaccatgaacgaccagaaagtcctgatcgacgagctggtagcc
gtacgtcacctgaacgaattcaccgtcaaggcgcctgaagaagtcaccttgatggacgtt
tcgccgaagcaggtagtttcggttgcagcgtcgctgatcccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaagctgtaccaaccctgcgcgct
gacaagccgctggtaggtaccggcatggagcgtaacgtagcccgtgactccggcgtttgc
gtcgtggctcgtcgtggcggcgtgatcgattccgtcgacgccagccgtatcgtggttcgt
gttgctgatgacgaagttgaaaccggcgaagctggtgtcgacatctacaacctgaccaaa
tacacccgctcgaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgat
cgcgttcagcgtagcgacatcatggccgacggcccgtccaccgacatgggtgaactggcg
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagaccgtttcaccacgatccacattcaggaa
ctcacctgtgtggcccgtgacaccaagcttggcccagaggaaatcactgcggacatccct
aacgtgggtgaagctgcgctgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagttggcgcaggcgacattctggtaggtaaggtcactccgaaaggcgagacccaactg
actccggaagaaaaactgctgcgtgcaatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgtgtacctaccggtaccaaaggtactgtcatcgacgtacaggtcttcacc
cgcgacggcgttgagcgtgatgctcgtgcactgtcgatcgagaagtcccagctggacgag
atccgcaaggatctgaacgaagaattccgtatcgttgaaggcgcgacgttcgaacgtctg
cgttccgctctggtaggccacaaggctgaaggcggcgcaggtctgaagaaaggtcaggac
atcaccgacgaagttctcgacggtcttgagcatggtcagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggctcaggcctacatcgttgatcgccgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgttgaaaatcgtcaaggtttacctggcaatccgtcgtcgcatccagccgggc
gacaagatggccggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtggtcctcaacccactgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacttgggcctcgcggccaaaggt
ctgggtgagaagatcaaccggatggtcgaagagcagcgtaaagtcgctgaactgcgcacc
ttcctggacgagatctacaaccagatcggcggtcgtaacgaggatctggacagcttctct
gatcaggaaatcctagatctggcgaagaacctgcgtggcggtgttccaatggccactcca
gtgttcgacggcgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgccg
gaaagcggccagatgcagctgactgacggccgtaccggcaacaagttcgagcgtccagtt
accgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgcg
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcttac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccgtaccaagatgtac
aaaaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaggaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
