Paraburkholderia ginsengisoli: I6I06_04555
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Entry
I6I06_04555 CDS
T07246
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pgis
Paraburkholderia ginsengisoli
Pathway
pgis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6I06_04555 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgis03400
]
I6I06_04555 (mfd)
Enzymes [BR:
pgis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6I06_04555 (mfd)
DNA repair and recombination proteins [BR:
pgis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6I06_04555 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QQC64752
UniProt:
A0A7T4N3V1
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All DBs
Position
1:1040204..1043686
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AA seq
1160 aa
AA seq
DB search
MPDIAASSQSSPPVALVKAGQRFTFDGTHGSSDALLIARYHLAWREKVPLLAVVCESAVD
AQRLSQEIGFFAPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPA
TTALYRMPPASFLAAYTFSFSQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLLD
LYPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDEAARTAFRSR
WRESFEGDPSRASVYKDIGNGVPSAGIEYYLPLFFEETATLFHYLPEGAQLVLVGDLEAA
IRRFTNDTKQRYNFLSHDRDRPILDPERLFLTDQDFFTFAKPFARLALPANAGGGWSTPL
PNLAIDRHADDPVLALRAYLNSTPNRVLFAAESAGRRETLLQLLADNHLKPASSDSFQDW
LLGDAHFSLGVAPLANGFAVPADGIAIITETELYGPLARRAGRRRQEQASNVDSMVRDLS
ELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYAGDSKLYVPVAQLHVISRYSGA
DPESAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGHAFALEPKDYVKFAE
SFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALL
SPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIQQINEGTVDIVIGTHKLLS
SDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEDSVIREAMLRELKRGGQVYFLHNEVETIENRRQMLEALVPE
ARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFGLAQ
LHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGT
GEVLGDKQSGEIHEIGFQLYTDMLNDAVKALKEGKEPDLTAPLAATTEINLHAPAILPAD
YCGDVQERLSLYKRLANCEHSDSIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGI
SKIDAGEAVIGLQFIPNPPIDAMRIIEMVQKHKHIKLAGQDKLRIETRSPDLAVRVATVK
ETLRALGAPSRGTAPAAAAR
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgccagacatcgccgcatcatcgcagtcctctccgcccgtcgcgctcgtcaaggccggc
cagcgtttcaccttcgacggcacgcacggctcgtccgacgcgctgctgatcgcccgctac
catctcgcctggcgcgagaaggtgccgctgctggcggtcgtgtgcgaaagcgccgtcgat
gcgcagcgcctgtcgcaggaaatcggcttcttcgcgcccgacgcgcgggtgcgcctgctg
cccgattgggaaacgttgccttacgataccttttcgccgcaccaggatctggtctccgag
cgcctcgccacgctgcacgatctcggcgagggccgttgcgacatcctgctggtgcccgcc
accacggcgctctaccggatgccgcccgcgtcgttcctcgccgcctacacgttttcgttc
tcgcaaggcgagcgcctcgacgaagcgaagctcaaggcgcagctgacgctcgccggctac
gagcacgtgagccaggtggtgcgtcccggcgagtactgcgtgcgcggctcgctgctcgat
ctttatccgatgggctcgccgctgccctaccggatcgacctgttcgacgaccaggtcgac
tcgatccgcgcgttcgatccggacacgcagcgcagcctctacccggtgaaggacgtgcgc
cttttgccgggccgcgagttcccgttcgatgaagccgcgcgcaccgcgttccgcagccgc
tggcgcgagagcttcgagggcgacccgagccgcgcgtcggtttacaaggacatcggcaac
ggcgtgccgtcggcgggcatcgaatactatctgccgctcttcttcgaggagacggcgacg
ctgttccactacctgccggaaggcgcgcaactggtgctggtcggcgatctggaagcggcg
atccggcgctttaccaacgacacgaagcagcgctacaacttcctgtcgcacgatcgcgac
cggccgatcctcgacccggagcggctgttcctgacggaccaggacttcttcacgttcgcc
aagccgttcgcgcggctcgcgttacccgcgaacgcgggcggcggctggtcgacgccgctg
cccaatctcgcgatcgaccgtcacgcggacgatcccgtgctggcgttgcgcgcgtatctg
aacagcacgccgaatcgcgtgctgttcgccgccgaatcggcgggccggcgcgaaacgctg
cttcagctgctggccgacaatcatctgaaacccgcttcgagcgacagcttccaggactgg
ctgctcggcgacgcgcacttctcgctgggcgtcgcgccgctcgccaacggcttcgcggtg
ccggccgacggcatcgcgatcatcaccgaaaccgagctgtacggaccgctcgcgcgccgt
gcgggacgccgccgccaggaacaggcgagcaacgtcgattcgatggtgcgcgatctgtcc
gagcttaaagtgggcgacccggtcgtgcattcgcagcacggtatcggccgctatatgggt
ctagtgacgatggacctcggcgaaggcgagaccgagttcctgcacctcgaatacgcgggc
gacagcaagctctacgtgccggtcgcgcaactgcacgtgatctcgcgctatagcggcgcc
gacccggaaagcgcgccgttgcactcgctcggttcgggccagtgggaaaaggccaaacgc
aaggccgcgcaacagattcgcgacaccgccgccgaactactgaacctgtatgcgcgccgc
gccgcgcgttcgggccacgccttcgcgctcgaaccgaaggattacgtgaagttcgccgag
agcttcggcttcgaggaaacgcccgatcaggccgccgcgatcgcggccgtgatcggcgac
atgacgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagacc
gaggtggcattgcgcgcggcgttcatcgcggtgatgggcggcaagcaggtcgcgctgctc
tcgcccaccacgctgctcgccgaacagcacacgcagaccttcaccgatcgcttctccgac
tggccggtgcgcatcgccgaactgtcgcgcttcaagtcgaccaaggaagtcaacgcggcg
atccagcagatcaacgaaggcacggtcgacatcgtgatcggtacgcacaagctgttgtcg
tcggatgtgcaattcaagcggctggggctcgtgatcatcgacgaggaacatcgcttcggc
gtgcgtcagaaggaggcgctcaaggcgctgcgcgcggaagtcgacgtgctcacgctaacc
gcgacgccgatcccgcgtacgctcggcatggcgctcgaagggctgcgcgatttttcggtg
attgccaccgcgccgcaaaagcgcctcgcgatcaaaaccttcgtgcgccgcgaagaagac
agcgtgattcgcgaagcgatgctgcgcgagctgaagcgcggcggccaggtctacttcctg
cacaacgaagtcgagacgatcgagaatcgccggcagatgctcgaagcgctggtgcccgaa
gcacgcatcgcggtcgcgcatggacagatgcacgaacgcgaactcgaacgcgtgatgcgc
gacttcgtggcacaacgcgcaaacgtgctgctgtgcacgacgattatcgaaaccggcatc
gacgtgccgagcgcgaacaccatcctgattcatcgcgccgacaagttcggcctcgcgcaa
ttgcaccagttgcgcggacgtgtgggccgctcgcatcaccaggcgtattcgtatctgctg
gtgcatgacccgcaggggctgaccaagcaggcgcaacgccgcctcgaagcgatccagcag
atggaggaactcggctcgggcttctatctggcgatgcacgacctcgaaattcgcggcacc
ggcgaagtgctcggcgacaagcagtcgggcgagattcacgagatcggcttccagctctat
accgacatgctgaacgatgcggtgaaggcgctcaaggaaggcaaggaacccgacctcacc
gcgccgctcgccgcgaccaccgaaatcaacctgcacgcgccggccattctgcccgcggac
tattgcggcgatgtgcaggaacgtctgtcgctttacaaacgccttgccaactgcgagcac
agcgactcgatcgacggcattcaggaggagctgatcgaccgcttcggcaagttgccgccg
caagcacatgcgctcgtggagacgcatcgtctgcggctcgccgcgaagccgctcggcatt
tcgaagatcgatgcgggcgaagcggtgatcggcttgcagttcatccccaatccgccgatc
gacgcgatgcggatcatcgagatggtgcagaagcacaagcacatcaagctcgcgggccag
gacaagttgcgcatcgaaacgcgcagccccgacctcgcggtacgcgtcgcaacggtcaag
gaaaccttgcgcgcgctcggtgcgccgagtcgtggcacggcgcctgctgcggccgcgcgc
tga
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