Paenibacillus graminis: PGRAT_06040
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Entry
PGRAT_06040 CDS
T03325
Name
(GenBank) helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pgm
Paenibacillus graminis
Pathway
pgm03420
Nucleotide excision repair
pgm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PGRAT_06040
03430 Mismatch repair
PGRAT_06040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgm03400
]
PGRAT_06040
Enzymes [BR:
pgm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PGRAT_06040
DNA repair and recombination proteins [BR:
pgm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PGRAT_06040
MMR (mismatch excision repair)
Other MMR factors
PGRAT_06040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
UvrD_C
Viral_helicase1
PhoH
SLFN-g3_helicase
DEAD
NACHT
ResIII
AAA_30
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AIQ67246
UniProt:
A0A089M0E5
LinkDB
All DBs
Position
1357901..1360312
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AA seq
803 aa
AA seq
DB search
MNLNEWQQEQQRLEIVKEKLKSTIVDLEPKIGQLKDQAADIRKRFWEEVTVNTSTDEDFE
ETFFTINQQSAMLSERERSHRRLVQQWGNMNRLLPSPYFGRVDFLEDGQGITEQVYIGVS
SFADADGLSFLVYDWRTPIASLYYDYPPGTAAYETPGGRITGTMSLKRQYQIRGGHLQHM
FDSSLTIGDELLQQVLGGGADAQMKSIVATIQKEQNAIIRNDKSKLLIVQGAAGSGKTSA
ALQRVAYLLYKHRERLTADQIVLFSPNPMFNSYVSTVLPELGEENMQQTTFQEYLEYWLG
STFRLEDPFDQIEYVLTGQQAQEYKARMHGIQYKASEAYLQALRGYSVWLEQEGMKFVSI
RFQDRVLISDEQIKAKFYSYDASIRLTNRVTLVQKWLLQELARLERKEQEADWVQEELNY
LDGEQYAEAFSMLHKDQGVFDFAEKYARIDEMLRNKRRPDEGDFDFAEREEELLSRMIVK
EQFKPLRRNVKQFSFIDMLGLYSQLFSSEAAYREMTDEAEVPELWPEICVYTKDKLSRNE
LFYEDATPYLYLKELVEGTRTNTQVRHIFVDEGQDYSMFQYEFLKRLFPRARMTVLGDFS
QAIFTQATNLHGTGSPLVRLFGEEDTSQFLLVRSYRSTREIVEFTKPLLPGGEAIVPFER
SGRKPILAGLETSGRRVEQIAADIAALQAEGYTSIAVISKTAAGSTEAYEALAAGGVKEL
RLITKNTPTFEKGILVIPAYLAKGVEFDAVLIYDASLQSYHRENERKLFYTACTRAMHRL
LLYSAGEWTPFIQAVDTSLYELL
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgaacttgaatgaatggcagcaggagcagcagcggctggagatcgttaaggaaaaactg
aaatctacaatcgttgaccttgagcccaagataggccaattaaaggatcaggcggcggat
atccgcaaaagattctgggaagaggttacggtcaacaccagtacggacgaagatttcgaa
gaaacgtttttcacaattaaccagcaatccgcaatgttgtccgaacgggaacgcagccat
agacggctcgtgcagcagtggggaaatatgaaccggctgctgccatctccttattttggg
cgcgttgattttctggaagatggccaggggattacggagcaagtgtatatcggggtgtcc
tccttcgccgatgcggatggtctgagcttcctggtgtatgactggcgtactcctattgca
agtctttactatgactatcctccgggcacggcagcctatgaaacaccgggagggcgcatc
acaggaaccatgagcctgaagcgtcaataccagatccgcggcggccatctccagcatatg
ttcgattcaagtttaaccatcggcgacgaattgctccagcaggtgctcggtggaggggca
gatgcgcaaatgaagagcatcgtggcgacgattcaaaaagagcagaacgccattatccgc
aacgataaaagcaaattgctcattgtgcaaggggcagccggaagcgggaaaacctctgca
gcgctgcagcgcgtagcttacctgctgtataaacaccgcgaaaggcttacggcggatcag
attgttcttttctcgcctaaccccatgttcaacagctacgtttcgactgttcttcctgag
ctaggggaggaaaacatgcagcagaccaccttccaggaatatctggaatattggctcgga
tcaacatttcgcctggaggacccgtttgatcagatcgaatatgtgctgaccgggcagcag
gctcaagaatataaggcccgtatgcatggaatccaatataaagcatcggaagcctatctt
caggcgctccgcgggtattcggtgtggctggagcaggaaggcatgaagtttgtcagcatc
cgtttccaggatcgcgtactgatctctgatgagcagatcaaagccaaattttacagctac
gatgcttctatccgcctgacgaaccgtgtcacacttgtacagaaatggctgctgcaggaa
ctggcccgactggagaggaaggagcaggaagcagactgggtgcaggaggagcttaactat
ctggatggggaacagtatgctgaagcattcagtatgctgcacaaagaccagggagtgttt
gactttgccgaaaaatatgcccgaatcgatgaaatgctgcgcaacaagcgccgcccggat
gagggcgattttgattttgccgagcgggaggaagagctgcttagccggatgatcgtgaaa
gagcaattcaaacccctgagacggaatgtaaagcaattctcgtttatagatatgcttggg
ctgtatagccagttgttcagcagtgaagcagcatacagggagatgacagatgaagctgag
gtaccggagctttggccggaaatatgcgtgtataccaaagataagctgagccggaacgaa
ctgttttatgaagatgctacaccttatttatatctaaaagaacttgtcgaaggtacccgg
accaacactcaggtgcggcatatattcgtcgatgaaggtcaggattattcgatgtttcag
tatgagttcctcaagagactctttccccgtgcccggatgaccgtgctgggcgatttcagt
caggccatctttacacaggcaacgaacctgcacgggaccggctcaccgttggtccggctc
tttggcgaggaggacaccagccagtttcttcttgtccgcagttaccgttctacccgtgaa
attgtggagttcacgaagccgcttttgccgggcggagaagccattgtaccttttgagaga
agcggcaggaagccgatcctcgcggggctggagaccagcgggcggcgggtggaacagatc
gcagcagatatcgcggcgcttcaggctgaaggttatacatccattgcagtgatttcgaaa
accgctgccgggagtacagaagcctatgaggctctagcggccgggggtgtcaaagaactg
cggctgatcacaaagaacacgcccacttttgaaaagggtatactggtcattcccgcatat
ctcgctaagggggttgaatttgatgcggtgttgatttacgatgcctccttgcagtcttat
caccgggagaatgagcgcaagcttttttatacagcatgtacacgggctatgcaccggctt
ttgctgtactcggcaggggaatggaccccatttattcaggcggtagatacatctttgtat
gaattgctgtga
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