Paenibacillus graminis: PGRAT_24925
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Entry
PGRAT_24925 CDS
T03325
Name
(GenBank) ATP-dependent helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
pgm
Paenibacillus graminis
Brite
KEGG Orthology (KO) [BR:
pgm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgm03400
]
PGRAT_24925
Enzymes [BR:
pgm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PGRAT_24925
DNA repair and recombination proteins [BR:
pgm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
PGRAT_24925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
DEAD
AAA_30
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIQ70515
UniProt:
A0A089MDS9
LinkDB
All DBs
Position
complement(5487703..5491860)
Genome browser
AA seq
1385 aa
AA seq
DB search
MIRRAEIEPKPKGSLWSDDQWRAIAESGDDILVAAAAGSGKTAVLVERIIRKISNEKNGF
SVDRLLVATFTKAAAAEMRQRIREALERKLEEESSGEEEGNHGNEHLRRQLALLGRASIT
TLHSFCLEVIRRYYQLIPIDPGFRILNEHEAEMMRQELLEELLEEKYGEVAEDGEDTVFV
RLADWFSGERSDDAVHSLIQRLHDFARSHPWPALWLRDTAADFSLPDTDALSRTSWVQSI
LAEAKLTLDGAASQLRQGREIALQPGGPAPYADNLAADLEMVQSLQEALEFRPWAELYDI
FIEISFGKLKACKKDSTDPGLQERVKELRDNVKKSLLELQKSLFGRPAEAFLGELHEAAP
LMRELAETVIEFGERYRIEKAGRGLVDFSDLEHYCLQILRHEDSEPGHSLPSDAAMEYRD
QFDEVLLDEYQDTNSVQEEIVRLISRESPGNRFMVGDMKQSIYRFRLAEPGLFLDKYKSF
GSAADSSNDALTGSREAAGAVEALEPGKPGGGSVIDLARNFRSRLEVVNAVNMIFRQIMD
STVAEISYDERAELVYGAHFPGAAENGPDTYFAPELLLIDRGTSLSSRAEETAEDGELPP
QENEAMESETAQLEARAIVRRISQMTGMSGGEPLMIYDKALKIMRPVVYGDIVILLRSAR
IWTPLMVEELRLEGIPAYGDQNKGYFQATEVEIALSLLQIVDNPRQDIPLAGVLRSPVVN
LREEELAAVRLCSDGSFFDAVLAAAGERIESENGLGEHHAFKSGAAHAADHAAPSEESPA
EGGPLAGKMAGEAAMPEISGKLQKKLQVFLKRLEGWRTAARQGSLSTLIWRIYAESGYLE
WVGGLPGGFQRQNNLTALYDRAVQFEKDTNARGLFRFLVFISRLRENGGDLGAAGGTGEE
AGGVRIMTIHKSKGLEFPVVFLAGMAKPFNRQDLYSPFLMHKELGFGPRFVERETRVSYP
TLPYLAISRRSRLELLAEEMRVLYVGLTRPRDKMILVGTVRDLPRTLAGWSSVQGREQML
LEDHMLARGRSYLDWVGPALIRHPSAAVLRKLAGTNGPVSAVLHGDASNWSISAVNAQEL
SSGSALAASGTGDQNEERQAVLESLRHGRSVPKRSAAREAEVTERLKWVYPYAAASGIPA
KTSVTELKSMLSMQEQPSYDLLEESLPAGAGHSLASRTAGTDSLHLQRPKFMEKRGLSPS
ERGTAYHTVMQHVPLEGEVDRSVLEATIARLTRLAILTGEQAEAVEISDIEAFYTGEMGR
RLIGASWKVREQPFSYMVPAGKAYHGLEYLNEAASGLETPAGNASFGESVLIQGVIDCLF
REEGQLILLDYKTDAVLEHQGGLESLKEKYRFQLELYSKALLDILGEPVREIWLYFFDGG
HAVKL
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgatacgcagagcggaaatagaaccgaaaccaaaaggcagcctatggagcgatgaccag
tggcgcgccattgccgagagcggtgacgatatcctggtcgcggcagcagcgggctccggc
aaaacagcggtgctggtggagcggattatccgtaaaatcagcaatgagaagaacgggttc
agtgtggacaggctgctggtggctacctttaccaaagcagcggctgctgaaatgcggcag
cgcatccgcgaggcattggaacggaagctggaggaagaaagctccggggaagaagaagga
aaccatggcaatgagcatctgcggcgtcagcttgccctgcttggcagagcttcgattacg
acgttgcattccttttgcctggaggtgatccggcgttattaccagctcatccccattgat
ccgggcttccggattctgaatgagcatgaggcggagatgatgcgccaggagctgctggag
gagctgctggaagagaaatatggagaggttgccgaagacggggaggatacagtatttgtg
cggctggctgactggttcagcggcgagcgcagcgatgatgccgtccactccctgattcag
cggctgcatgattttgcgcggagccatccctggccggcactgtggctgcgggacaccgca
gcggatttctccctgccggatacagatgccctgagccgcacgtcatgggtgcagagcatc
ctggccgaagcgaagctcacgctggacggggcggcgagccagctccgccagggccgggaa
attgccctgcagcccggcggccctgccccctacgcggacaatctggctgcggatctggaa
atggtgcagtcgctgcaggaagcgctggaattccgtccgtgggctgagctgtatgatatt
tttatcgaaatatcgtttgggaagctgaaggcctgcaagaaggattcgaccgacccgggg
ctgcaggagcgggttaaggaactgcgcgacaatgtgaagaaaagcttgctggagctgcaa
aaatcgctttttggccgccccgccgaagcctttttgggtgaactgcatgaggccgccccg
ctgatgcgcgagctggctgagacggtcatcgaattcggggaacgctaccggatcgagaag
gcaggccggggattggtggatttcagcgacctggagcattattgcctgcaaatcctgcgg
catgaagattcagaacccggacattcgctgccttcagatgcggctatggagtaccgggac
cagttcgacgaggtactgctggatgaatatcaggatacgaacagcgtgcaggaggaaatt
gtgcggctgatttcccgggaatcgccgggaaaccgttttatggtcggagatatgaagcag
agcatttaccgtttccggctggcggagccgggattgttcctggataagtataagagcttt
ggttcagccgcggacagcagcaatgatgccttaaccggcagccgggaggctgccggggct
gttgaagcccttgaaccgggcaagcccggcggcggctccgtaattgatctggcccgcaat
ttccgcagccgtctggaggtcgtaaatgccgtgaatatgattttccggcagattatggac
agtacggttgctgaaataagctacgatgagcgggccgagctggtttacggcgcccatttt
ccgggtgcggcagagaatgggccggatacttattttgcccctgagctgctgcttattgac
cggggaacatccttatcttcacgtgctgaggaaactgcagaggacggagagcttcctccg
caagaaaatgaagcaatggaaagtgaaaccgcacagcttgaagcaagagccatcgtccgg
cgcatctcccagatgaccggcatgagcggcggtgagccgctgatgatctatgataaagcc
ttgaagatcatgcggccggttgtttacggagacattgtcattctcctgcggtcggcgcgg
atctggactccgctgatggtcgaagaactgcgcctggagggcattccggcatatggggat
cagaacaaaggatattttcaggctaccgaagtggaaattgccctttcgctgctgcagatt
gtggacaaccccaggcaggatattccgctggccggcgtcctccgttcgcctgtagtgaat
ctgcgcgaggaagagctggcagcggtgcgtctctgcagcgatggttcttttttcgatgca
gtgctggcggctgccggagagcggattgagtcagagaatgggcttggcgaacatcatgcg
ttcaagtcaggcgcagcccacgcagccgatcacgctgcacctagtgaagaaagcccagca
gaaggcggtccgttagcaggcaaaatggcaggagaagcggctatgccggagatttccggg
aaacttcaaaagaagctgcaagtttttctgaagcggcttgaaggctggagaactgctgcc
cgccagggaagccttagtactctgatctggcgtatctacgcagagagcggctatctggaa
tgggtcggcggcctgcctggaggctttcagcgccagaataatcttacagcgctgtacgac
cgggctgttcagtttgagaaggataccaatgcacgcggcttgttccgtttcctggtattc
atcagccggctgagagaaaacggcggcgacctgggagcagcgggaggaaccggcgaggaa
gctggcggggtccgaattatgaccatccacaagtctaaaggtctggagtttcccgtggtc
ttcctggcaggaatggccaagccgttcaaccgccaggatttgtattctcccttcctgatg
cataaagagctcggattcgggccgcgttttgtagagcgggagacccgggtcagttatcca
acactgccttatctggcgattagccgccgttcacgtctggaactgctggccgaggaaatg
cgtgtgctctatgtcggattaacccggccgcgcgacaagatgatcttggtcggcaccgtg
cgggatttaccccgtacccttgcaggctggagcagtgtgcagggccgggagcaaatgctg
ctggaggaccatatgctggcccggggccgcagctatttggattgggtgggaccggcgctg
atccgccatcccagcgcagctgtcctccgcaagctggcaggaaccaatggacctgtatct
gcggtgctccatggcgatgcctccaattggagcatctctgcggtgaacgcacaggagctc
agttccgggtcagccctggctgcgtctggtactggggaccagaatgaggaacggcaggcc
gtgcttgaatccctccggcacggccgcagtgtccccaagaggagcgctgcaagagaggcc
gaagtaaccgaacgcctgaagtgggtgtatccttatgcagccgcatccgggattcccgct
aaaacctctgtcaccgaactgaaatcgatgctgtccatgcaggagcagccgtcatacgac
ctgctggaagaatccctgcccgctggtgcgggtcacagcctggctagtaggacggcaggg
acggacagtctgcatctccagcgtccgaagtttatggagaagcggggcttgtcgccttca
gaacgggggacagcctaccataccgttatgcagcatgtgccgctggaaggtgaggtagac
cggtctgttctggaagctacaatcgcgcgtcttacgcggttagccattcttaccggcgag
caggctgaggctgttgaaattagtgatattgaggcgttttacacaggagagatgggccgc
agactgatcggagcttcatggaaagtaagagagcagccgttcagctatatggtgccggcg
ggcaaagcctatcatggccttgagtatctgaatgaagcggcatcggggctcgaaactcct
gcaggaaacgcatcctttggtgaatctgtcctgattcaaggcgttatcgactgcctattc
cgggaagaggggcaactgattctgctggattataagaccgatgctgtgctggaacatcag
gggggactggaatcgctcaaggagaaataccgttttcagctggagctctacagcaaggcg
ctgctggacattctgggggagccggtccgtgagatctggctgtacttttttgacggcgga
catgcagtgaagctataa
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