Puccinia graminis: PGTG_06508
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Entry
PGTG_06508 CDS
T02226
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pgr
Puccinia graminis
Pathway
pgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGTG_06508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgr03019
]
PGTG_06508
Messenger RNA biogenesis [BR:
pgr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PGTG_06508
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PGTG_06508
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
ARM_Cnot1
TFIIA
NOT1_connector
Lin-8
Motif
Other DBs
NCBI-GeneID:
10539563
NCBI-ProteinID:
XP_003324971
UniProt:
E3K8W3
LinkDB
All DBs
AA seq
1481 aa
AA seq
DB search
MFTSQPSSVTLTKMLRTNSKLKDANEDGEDDPRVVFPAIKSDDDLILREIRRRKKLAALD
AASGRPAEPEDRLGNKKLITSKMEFLEPEEHISDKILFIINNLAFNNLETKLTEMSSQIK
PEHYNWFAKYLVNHRVSIEPNNHSLYLQFLDKLALPHMYKKINNETLIKCVIMLNSEQTL
KSGTDRTILKNLASWLGSLTLAKNLPIKHHNIAFKDLLLQGFRSNRLIVAIPFVCKVLEQ
SSKSKVFRPPNPWLMGILKLLIELYHYGELKLNLKFEIEVLCKALEVELKDVKPTEMLKK
QEELSQQRQEVEEVKAAARSLAAAQQQAEQQHSHLSIENVIGRATGTLNPNSVPSAGTSI
TATQPLENAGPNNLPAGSHSLSLNGQAGYASSLQDLLKQALLELPLLMTFSTEVVLNNNI
LWKRVVFTSIERAIRDIIGPVVERSVTIANISTREMILKDFAMEGKEDQMRTSAHMMVKN
LAGSLALVTTKEPLRNQILVNIRSLSIQNGFPEHNVSDEEIQQVTADNLDVACQVIEKVA
TDKAILEIDNSLASAYEARRRHREHTNSAFWDTSAMAASHYSGMLPNPLKLKLGGLEPEQ
LRIYEEFSNVRDDSNPSNAMAVQQQQHSWQSQQQQQQQQQQQQQQQQQHQQLQLQHQQQQ
QQQHLQQQLQPQGPVPGLDAARSPALAESTPNLLVGPTENANRPLNSLSEALTRINSLAG
EIERLVLTVTVESLAEIGENHEIRGLITEILKMLRQANPTLKDQLTLSFAQKSVAMLYRS
ESKLGRDLFVNLLEEICEMTPKVAHEVSQWLIYAEDERKYNVPVTLVLITHQIVSLGDFD
AQSAKLILRDYKPSLMNYVAEFIEACVMGSESSLIPIGLLKHSIQALQRAIQIGRATPKV
TSIMQNIQDKLPALGSAKDLGPVTIKSINDEAGLREQLSFCFAEWVRMYSSSYSVEKPFI
EFISSLQAHGILKGEEVSSLFFRVCMEVSIDAYIKAKASGSTAARGIFQPVDAFARLISL
MIKYHTDPTGIDIERAKTHYMSKLLSIVLMVMGQFHKELGEHFQQKPFFRFFSGLLVHIN
ALETHLGSCYQSVMMTLSNLIESMQPSNFPGFTTSWMALISHRLLMPKLLMFKDREGWST
VHRLLLGHLRFLRPFLASGTLDDVGRTLYTGTVRIFLVLLHDFPTFLSVYHHSLCSALPP
HCIQLSNLILAAFPLGVRLHDPFVPGFNLESLPDSRISPTIISDFTHVLEQADLRQLVDK
ATSAASPQIAVGPIKDRLTHPTKATEGTVYDIPLLNSLVLYLGVQAILRVERESVPLYDS
SCTSATIYKQLVNEIDPEGRYLLLVAAIQQLRWTNSHTLWFSSLLIDTFMSSDSEVVKEQ
VARVFLERLLVQRPHPFGMIYAFIKFLSQCGTTTTANTNSNLNHGNHHIGNGNGNGNTLA
MEKAGDAEGLGSSLESLKVVKKSQELMALFAICRKHVVQIN
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
atgtttacctctcaaccatcgtcggtgaccctgacgaagatgctgagaacaaactcgaag
ctaaaagatgcaaacgaagacggagaggatgacccccgagtcgtcttccctgcaattaaa
tccgatgatgacttaatcctacgcgaaattcgtcgccggaagaaattggccgctttggat
gctgctagtggtcgaccggccgaaccagaggataggttgggtaataaaaaattgattaca
tcgaagatggaattcttagagcctgaggaacacatctcggataaaattctattcatcatc
aacaacttggccttcaacaatctcgaaaccaagttaacggagatgtcgagtcaaatcaag
ccagaacactacaactggtttgcgaagtacctcgtcaatcaccgagtctcgatcgaaccc
aacaatcactctctttaccttcaatttctagacaagcttgcactccctcatatgtataaa
aaaattaataatgaaactttaattaagtgtgtaataatgctcaattcggaacaaacgctc
aagtcaggaacggatcggacgattttgaaaaacttggcatcttggctcggctcactgacg
ttagcgaagaacttgccgatcaagcatcacaacattgccttcaaggacctcttacttcaa
ggttttcgatctaaccggttgatcgtggccatcccatttgtgtgtaaggtactcgagcag
tcaagcaaatcgaaagtctttaggccaccgaatccatggctgatgggtatcctcaagcta
ctcattgaactttatcattatggagaactaaagttgaacctgaagttcgagattgaagtc
ctctgcaaggctttggaggtggagttgaaggatgtgaagccgacggagatgttgaagaaa
caggaagaacttagccaacaacgccaagaggttgaagaggtgaaagcggcagcccgatcg
ctcgcggctgcacaacagcaagccgagcaacagcacagtcatctatcgatcgaaaacgtt
atcggaagggctacgggtactctgaatccgaacagcgtcccctccgccggtacctcgatc
actgccacacaacccttagagaatgcgggccccaacaatctcccagctggctctcacagt
ctatccctcaacggacaagctggttatgccagcagccttcaagatctgttgaagcaggcg
ttgctcgagttacctctattgatgacgttttcaactgaggttgtcttgaataataacatt
ctttggaagcgagtggtgtttacttcaatcgagagagccattcgagatatcatcggtcca
gtagtcgaacgatcagtgacgattgcaaatatttcgactcgagagatgatcttgaaagat
tttgccatggaaggcaaagaagaccagatgcgaacctccgcccatatgatggttaaaaac
ttggcaggatctctagcgttggtcaccacgaaagaacctctacgtaaccaaatcctggtc
aacattcgctccctgtcaattcagaatggatttccagaacataatgtgtcagacgaagag
attcaacaggttaccgctgacaatctggacgtcgcctgtcaggtgatcgaaaaggtcgcc
actgataaggccatcctcgagatcgacaacagtctagcatctgcttatgaagcccgtcga
agacatcgtgaacataccaacagtgcattttgggatacctctgccatggccgcttcgcat
tactccggaatgttacctaaccctctcaagttgaagctgggtggtctcgagccagagcag
ttgagaatatacgaagaattttcaaatgttcgagatgacagcaatccttccaacgctatg
gctgtgcaacagcaacagcactcatggcaatcacagcagcaacaacaacaacaacaacaa
cagcagcagcagcaacaacagcaacaccagcagctacagctacagcaccaacaacagcag
cagcagcagcatctgcaacaacaacttcaaccgcaaggccccgtcccaggtcttgatgcg
gctcgttcccctgctctggctgagagtactcctaatttacttgtcggtccaactgaaaac
gcgaatcgcccacttaattcactttcagaggctttgactcgtatcaattcattggcaggt
gagatcgagagactggttctgacggttacagtcgaaagcttagctgagattggcgagaat
cacgagatccgtggcttgatcactgagatcctgaagatgcttcgtcaagccaatccgacg
ctcaaagaccagttgacgttatcgtttgctcagaaatcagtcgcgatgctctatcgatct
gaatccaaattgggccgggatctgtttgtgaacctcttggaggagatctgtgagatgaca
ccgaaagtcgctcacgaagttagtcaatggttaatctacgccgaagatgagcgcaaatac
aatgtgcccgtgacattggtgttaatcacccatcaaatcgtgtcccttggggatttcgac
gcccaatccgccaagttgatcctccgggactacaaaccaagtctgatgaactacgtggcc
gagttcattgaggcttgtgttatgggatcagagtcttcgttgatacctattggacttttg
aaacattccattcaagccctccaacgagcgattcaaatcggtcgtgcaacaccaaaggtg
acctctatcatgcaaaacattcaggataagcttcccgctctcggcagtgctaaggatttg
ggacctgtgaccatcaaatcgatcaacgacgaggctggcctacgggagcaacttagtttc
tgctttgctgaatgggttcggatgtactcgagctcgtactcagtcgagaagccatttatc
gagttcatcagctcgctccaagcacatgggatcctaaagggcgaagaagtctcgtccctg
ttcttccgggtgtgtatggaagtcagcattgatgcttacatcaaagcaaaggcgtccggc
agtacagccgcccgagggatcttccagcctgtagatgcctttgcgagattgatctccttg
atgatcaagtaccataccgaccccactggaatcgacatcgagcgagcaaaaacacattac
atgtccaagttgctgtcgatcgtgttgatggtcatgggtcagtttcacaaggaacttggc
gagcatttccaacaaaagcctttcttccggttcttctctgggctgttggtccacatcaat
gcgctggaaactcatttgggaagctgctatcaatccgtcatgatgaccttgagcaacctc
atcgagtctatgcaaccttccaactttccaggcttcactacatcatggatggccttaatc
agccatcggctattgatgcccaagcttctgatgttcaaggatcgggaaggatggtcaact
gtacaccggctgttacttggccatctgcgattccttcgtccattccttgcctcgggcacg
cttgatgatgtcggccggacgctttacaccggcaccgtccgaatcttcctggtccttttg
catgacttccctaccttcctctctgtatatcatcactccctctgctcagcactaccaccc
cactgcattcagctctctaatctgatcttggcagccttcccactcggagtccgactccat
gatccgttcgtccctggcttcaacctcgagagcttgcccgattcgcgaatcagtccgacc
atcatctccgacttcacccatgttctcgagcaagccgaccttcgtcaattagtcgataag
gccacctccgctgcatccccgcagatcgccgtcgggcccatcaaggatcgactgactcat
cccactaaagctaccgagggcactgtctacgatatccccctcctcaacagcctcgtcctc
tacctcggtgtccaggctattctccgagttgaacgcgaatctgttccgttgtacgattcc
agctgtacttcggcaaccatctacaaacaattagtcaacgagattgatcccgaaggtcga
tacttacttcttgtagccgccatccagcagctgcggtggacaaacagccataccctctgg
ttttcatcgctcctcattgacacctttatgagctcggattcggaggtggtgaaggaacaa
gtggcgcgggtgtttttggaacgcttgctcgttcaacgaccccatccgtttgggatgatc
tatgcattcatcaaattcttgagtcaatgtggtacgactacaaccgctaatactaatagt
aatcttaatcatgggaatcatcatattgggaatgggaatgggaatgggaatactttggcg
atggagaaggctggcgacgcggaaggcttaggctcgtccttggaatccctcaaggtcgtc
aaaaagtcgcaggaattgatggccttgttcgcgatctgtagaaaacatgtggttcagatt
aactaa
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integrated database retrieval system
