Panicum hallii (Hall's panicgrass): 112873684
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Entry
112873684 CDS
T07366
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112873684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112873684
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112873684
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112873684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
112873684
NCBI-ProteinID:
XP_025792484
LinkDB
All DBs
Position
9:55933556..55952261
Genome browser
AA seq
2432 aa
AA seq
DB search
MIPFNPAVAAEVRALIQGADESTFDPIYRELCQLADCSPDGCVLLLQVCVDELLLNVGRA
KNPQPRHDLVAIIFRYCLDKPYFSTSFCEAVSTIPVNDGFLETLSNELELSAAERVGVGL
ALSDSENPDLNLEGRKFTIAQIEELCSNHAHSVSNERIQEIVVFLLQTDSLSKHMDSFTN
IISLLNPKERPFYVPVSLQEANSNQANSSRHTELCIGSLDDDFDSLLCEIGKQISLPNII
TELGYGCASDITHCKEILSHFEPLDDMAISKLLGAVVCTRIGVGETQNTYSIFLSAFGNS
QTVDSSQLTAWNIDVLVDSINEIAPGTNWAHVMENLDHEGFNIPDEAAFRLLMSIYSRAC
KDPFPLHAICGSLWKNTEGQLSFLKHAVVSPNDTFTFAHCTKKMAFPDLGTLNQGNQAWY
CLDLLEVLCQLAELGYAKPVRSMLDYPLIHCPEVLLLGVSHINTTYNLIQHEVLSHVFPA
MLKNNTHSRLMNYLWHINPYLTLRGFVDAHSDISCLLRTVEICEDLKILATVLDSTPFAF
SIRLATAAFRKDHSNLEKWLTEKLSTQSATFLEECVKFLKEIMISTNYGAVEGSIQHPQA
TISSICQDSCPVFIKVLRSHSGQLLSNELVDELRRVEAVYESRNHGDVGRDMPSPDVGED
IEAQANIYFQQMFAGQISVDAMIQMLLRFKESKDKRELSIFNCMISNLFEEYKFFPKYPD
AQLKLAAVLFGSVIKHQLVAHLALGIALRGVLDALRKSIDSKMFMFGTTALEQFMDRVIE
WPQYCNHILQISHLRGTHAELVSAIEQALAKISLSQNEPNLGPMLPVDQRGSGSQSIENI
EASEASWQFINSTPTQLDRTISSFALQQRNQGFLGERSKGSTNTSQAKPMMPIGQPPLAS
TSSELGANPKATVSLSSQASPHHSSSASGLSQPSGFLRSRSSAPSGILRQPSYTTGFGAA
LNIETLVAAAERRDTPIEAPPSEVQDKIFFMINNISTSNMEVKAKEFNEVLQEQYYPWFA
QYMVMKRASIEPNFHDLYLKFFDKVNSKSLNKEIMKATYENCKVLLQSDLIKSSSEERSL
LKNLGSWLGKFTIGRNQTLRAKEIDPKILIVEAYERGLMIAVIPFTSKILEPCHSSIAYR
PPNPWTMGILSLLVEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPSSLLKDRIRQVVGN
PDFSNKDVSTSQTSAAAEVSSGIVPSMSHVELQPEISSTSRATSLPNMLNQYAAPIRLPS
NSMVEDDKVALIMPEQVTSHSLTQAAPPQTPSPSPFSLSQLMAAIPRADIYFRINEKLNS
LGPQLQYSKIMDVALDKAIKEIIGPVIQRSVTIASRTTKELILKDYAMESDDGTISRAAH
LMVGTLAGSLAHVTSKEPLRVALLSHLRSLVQNLISNSETTEQISQILVNDNLDLGCALT
ETVATRKAVEMIDGEIKQPFSQLRRQKELQGSAYYDVSPYTQGLTRVPDVLRPKPSGNLS
AVQRRVYEDFITVWHSQSSQNASATTPATTVPVAPPDSSIASVHGPILAPSASSSFSTLQ
FAPFTSANQSTELIPDKMDSATTQLSSVSAQVSTTDSSGQVSGITNVASVFPPMASGDLL
VGELATTTKDIGAAIQASPAVAINRLGSAFPELLNTGDALDRYQLVWQKLETLIANNGKD
AEIQSVIAEVTDILLRCVSRDEAALAVAQKVFRSLYENASKSTFVTWLLATLVAVRDVCK
LVVKELTSWVIYSDEEKKFNLDIIIGLIRSDLLNLGEYNVHLAKLIDGGRNKTATEFAIS
LIQTLVTQDFSSVSELFNVVDALSKLATRPGSPDSLQNLIEIARSTFNNNANYAASKDEK
VIQSRDKKVLSGRPLMNNEEDNADGIAFASAADFQDKVAVLFSEWCQICDHPAMGDSVYS
HYIVQLQQNGLLKGDDVTDRFFFSLTELAIAHSIVSEQTIAPTGLSQQSSPQQQISYFSI
DSYSKLVASVVKQSVDLGPNKGSLLHKILAVTARIIQKDAEEKKVSFNPRPYFRLFINWL
NELTTSDLHHDGANFQVLTAFANAFHILQPLRVPAWSFAWLELVSHRCFMPKLLMCNLQK
GWPFFQRLLVDLFKFMEPYLRNAELGQPILLLYKGTLRVLLVLLHDFPEFLCDYHFSFCD
VIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLAEISIAPRIMTDVDGALKAKQMKA
QVDEYLKRPEGSLFLTDLKQKLLLPQNEANVAGTRYNVPLVNSLVLYVGMQAVQQLQQNK
ANASASAQINQSPQMDIFQIETATELFRNLVMTMDTEGRYLILNAIANQLRYPNSHTHYF
SFIILYLFAEATQEIVQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYSFWTRSFTH
CAPEIEKLFESVARSCGGKGADDGIGLADGGH
NT seq
7299 nt
NT seq
+upstream
nt +downstream
nt
atgatcccgttcaaccccgcggtcgccgcggaggtgcgtgccctgatccagggcgccgac
gagtccaccttcgaccccatctaccgcgagctctgccagcttgcggattgcagccctgat
gggtgcgttttgttgcttcaagtttgtgtggacgaattgctgctgaatgttggtagggcg
aagaacccccaacctagacatgatcttgtagccatcatcttcagatattgtttggataaa
ccctacttcagcaccagtttctgtgaagcagtgagcacaatacctgtcaatgatgggttc
cttgaaacactgtccaatgaacttgagctatccgcagctgagagggttggagttggactt
gctctgtcagattcggaaaatccagacttaaatctggaagggagaaagtttacaattgct
caaattgaggagttatgctcaaatcatgctcactctgtatcaaatgaacggattcaggag
attgtggtgtttcttctccagactgacagcctctcaaagcatatggactcttttactaac
attatctccttgctaaatccgaaagagaggccattctatgttcctgtgtcactccaggaa
gccaatagcaatcaagcaaattcttcgagacatacggagctgtgcattggtagcttagat
gatgattttgattcccttctatgcgaaattggaaaacagataagcctccccaatattatc
actgaactgggatatggatgtgcttctgatattactcattgtaaagagatactatcgcac
tttgagcctcttgatgatatggcaatctctaagttacttggtgcggttgtttgcactcgt
attggtgttggagagactcaaaacacatattcaatattcctttctgcttttgggaacagc
caaacagttgattcatctcagttgactgcctggaatatagatgtccttgtggattcaatc
aatgaaattgcacctggaactaactgggcgcatgttatggaaaatcttgatcatgagggt
tttaatatccctgatgaagcagcttttcgtttattgatgtctatatattctcgggcttgc
aaggatccattcccacttcatgcaatctgtggatcattgtggaagaatacagaaggacaa
ctgtcgttcttgaaacatgctgtggtttcgccaaatgatacatttactttcgcacattgt
accaagaagatggcttttccagacttgggaactcttaaccaaggcaatcaggcttggtac
tgcctagaccttcttgaggtgttatgtcagcttgctgaacttggctatgcaaagccagta
cgatcaatgcttgactatcccctgattcattgtcctgaagtgttgcttcttggtgttagc
cacatcaatactacatataatctcattcaacatgaagtattgtctcatgtttttcctgct
atgttgaagaacaacacccacagccgtcttatgaactacctctggcatatcaacccttac
cttactcttcgaggatttgttgatgctcattctgatataagttgtcttctgagaaccgtt
gagatatgtgaagacctaaagatcttggctactgtccttgattccaccccgtttgctttt
agcattagacttgctacagctgcctttaggaaagatcatagcaatctggagaaatggctg
actgaaaagttgagtacacaaagtgcaacttttcttgaggaatgtgttaaattcttgaaa
gaaattatgataagcacaaattatggtgctgtggaaggttccattcaacatcctcaagct
accatttcaagtatctgccaagactcttgccctgtatttataaaggttcttcgttctcac
tcggggcagctgttgtctaacgaactagtggatgaacttaggagagttgaagcggtgtac
gaatcaaggaatcatggtgatgtaggaagggacatgccctctcctgatgtaggggaagac
attgaagctcaggcaaatatttattttcaacagatgtttgctggacagataagtgttgat
gctatgatacagatgcttttacgcttcaaagaatctaaagacaagagggagctatcaatt
ttcaactgcatgatctcaaatttgtttgaagaatacaagttcttcccaaagtatccagat
gcacaacttaaattagctgctgtgcttttcggctctgtcataaagcatcaacttgtggcc
caccttgcactcggaattgctctacgcggtgttctcgatgccctgcgtaaatctattgat
tcgaagatgtttatgtttggtacaacagcgttggagcagtttatggatcgagtaattgag
tggccacagtattgcaaccatatacttcagatttcacatcttcgcggaacacatgctgaa
ttagtttctgctattgagcaagcacttgccaagatatcattgagtcaaaatgagccgaat
ttggggcctatgcttcctgtggatcagcggggttctggttcacagtctatcgaaaacata
gaggcttcggaagcatcatggcagttcataaattcgacaccaacacaactagataggaca
atttcttcctttgcactacaacagaggaaccaaggtttcctaggggagaggtccaaaggc
tcaactaataccagtcaagcaaaacccatgatgcctattggccagccacctctcgcttca
acttctagtgagctgggtgctaatccaaaggccactgtgtcattgtcctctcaagcttct
ccacatcattctagctctgcgtcaggtctttcacaaccttctggttttctacgatccaga
agttcagctccatcaggcatccttcgacaaccttcctacactacaggttttggagctgct
ttaaatattgagactcttgttgctgcagctgaacgaagagatacaccaatcgaggcccca
ccatctgaagttcaagacaaaattttcttcatgatcaataatatttccacttccaatatg
gaggttaaagcaaaagagtttaatgaggttttacaggagcagtattatccttggtttgcg
caatacatggtcatgaaaagggctagcatcgaaccaaattttcatgacttgtatttgaag
ttcttcgataaggttaactcaaaatccttgaataaggaaataatgaaagctacatatgag
aactgcaaggtcttgttacaatcagatcttatcaaatctagttctgaagagcgttcgttg
ctaaaaaatcttggtagctggcttggaaaattcactataggtaggaatcaaacattacga
gcaaaggaaattgacccgaaaatcttaatagttgaggcttatgaaaggggcttgatgatt
gcggtcattccgtttacttcaaagattctcgagccttgccattcaagtatagcatatcgt
cctccaaatccttggacaatgggtattcttagtctacttgttgaaatatataacctacca
aatctcaaaatgaacctgaagtttgacattgaggtcttgtttaagaatcttagtgttgac
atgaaagatgtaaaaccatcttctcttcttaaagatcggattcggcaagttgtgggaaat
ccagatttttcaaataaagatgttagtacatctcaaacatcggcagctgcagaggtctct
tctggtatcgttccttcaatgagccatgtggaactacaacctgagattagtagcacttca
cgtgccacaagccttccaaatatgcttaaccagtatgcggcacctattcgcctaccttcc
aacagcatggttgaagatgataaggttgctttaatcatgcctgaacaggttacctctcac
agcctgacccaggctgcaccaccacaaacgccgtcaccatcaccgttttctctgagtcag
cttatggcagcaatcccacgtgccgatatatatttcagaatcaacgaaaagcttaactct
cttggcccacagttgcagtatagcaaaatcatggatgtggctttggataaggctattaag
gagattataggtcctgtcattcaaagaagtgtaacgatagctagccgaaccaccaaggag
cttattctaaaggattatgcaatggaatctgatgatggtaccatatctcgcgctgcacat
ttgatggttggtacattagcaggaagtttagcccacgttacttccaaggagccccttcgc
gttgctttgttatctcatcttcgaagtcttgttcagaacctgattagtaacagcgaaacc
accgaacaaattagtcaaattcttgttaatgataatctggatcttggatgtgctctaaca
gagactgtggcaacacgcaaggccgttgagatgattgatggagagatcaagcaacctttt
tcacaactcaggagacaaaaggaactacagggctctgcgtattatgatgtttccccttat
actcaaggtcttacgcgtgtccccgatgttcttcgtcctaagccttctggtaacttgtct
gctgtccaacgacgagtatatgaggacttcatcactgtttggcatagccagagtagtcaa
aatgcttcggcaacaactcctgctacaactgtgcctgttgccccacctgattccagtatt
gcttcagttcatggcccaattttagcaccatcagcctccagtagtttctcaactctccaa
tttgccccgttcacatctgcaaatcagtcaacagaactaatacctgacaagatggattct
gctactacacagctttctagtgtttctgctcaagttagcacaaccgacagttctggccaa
gtttctggaatcacaaatgttgcatctgtttttccacctatggcctctggcgaccttcta
gtgggtgaattagcaactacaactaaagatataggtgctgcaatacaggcttcgcccgca
gttgctattaatcgtctaggatctgcttttccggaactgctgaatactggtgatgcgctg
gacagatatcagcttgtttggcagaagctggaaaccttgattgcgaataatgggaaagat
gcagaaattcagtctgttatcgcggaagttactgatatcttgctcagatgtgtcagtcgg
gatgaagctgcattagcagttgcacagaaggttttcagaagtttatatgagaatgcgtca
aagagcacttttgtcacatggcttctagcaacccttgttgcagtgcgtgatgtttgcaaa
cttgtcgtgaaagagttaacgagctgggtaatatattcagatgaagagaagaagtttaac
ttggacataattattggacttattcgttctgatctgcttaatcttggggagtataatgtt
catttggcaaagcttatagatggtggaagaaataagactgcaacggaatttgctatatca
ctcatccagacattggttacccaagatttcagtagtgtctccgagctttttaatgttgtt
gatgccttgtcgaagcttgcaacgaggcctgggtcacctgattccttgcagaacttgatt
gaaattgcaaggagtaccttcaacaacaatgctaattatgctgcttcgaaggatgaaaag
gttattcagtcaagagataaaaaggttctatctggtcgtcccttgatgaataacgaagaa
gataatgctgatggcattgcttttgctagtgctgctgattttcaggacaaggttgcagtc
ttgttttctgagtggtgtcaaatatgtgatcatcctgctatgggtgattcagtgtatagt
cattacattgtgcagttgcaacagaacggcttgctgaagggagatgatgtgactgaccgt
ttcttctttagtctgacggaacttgctatcgcacactctatagtgtctgagcaaaccatt
gctcctaccggactatctcagcaatcatccccgcaacagcagatttcatatttttcaatt
gattcatattcaaaacttgtggcttcagttgtcaaacagtctgtggatttaggaccaaat
aaaggcagtcttctccataagattctcgctgtgacagctagaatcattcagaaagatgct
gaagaaaagaaagtctctttcaatcctcggccgtattttcgtttgtttataaattggcta
aatgagcttactacttctgaccttcaccatgacggcgctaattttcaggttttgaccgca
tttgcaaatgcattccatattctgcaacccttgagagttccagcttggagttttgcttgg
cttgagttggtgagccaccgatgcttcatgccaaagttattgatgtgcaatttgcaaaaa
ggctggccattttttcagaggttgcttgttgatttgttcaaattcatggagccatactta
agaaatgctgaactgggacaacctattctccttttgtacaaaggaaccttaagagtgctg
cttgtgctactgcatgatttcccagaatttctttgtgactatcacttcagtttctgtgat
gtgattccaccaagctgcattcaaatgcgtaatgttattcttagtgcctttccacgcaat
atgagacttccagatccctccactcccaacttaaagattgatctgctagcggagatttca
atagctcctcgaatcatgactgatgtggatggtgctttgaaggcaaagcaaatgaaggct
caggttgatgaatacctaaagagaccagaaggctccctctttttaactgatctaaagcag
aagttgttgctaccacaaaatgaggcaaatgttgcagggactcgttacaatgttcctcta
gttaattcacttgtcctttacgttggtatgcaggctgtgcaacagttgcagcaaaacaag
gcgaatgcatcggcatcagcacaaattaaccaaagtcctcaaatggatatattccagatt
gaaacagccactgagctgttcagaaaccttgtaatgactatggacacagaaggacgctac
cttattctcaatgcgattgctaaccagcttcgctatccaaatagccatacccactacttt
tccttcatcattctgtacctgtttgccgaagcaacccaggaaattgtccaggagcagata
actagagttcttttggaaaggttaattgtcaaccgtcctcatccttggggattactcatt
actttcattgagctgataaagaacccacgctacagcttttggactagatcctttacacac
tgtgcgcccgagatagagaagttgttcgagtcagttgcaaggtcctgtggagggaaaggt
gcggatgatggaattggtcttgcagatggtggccactag
DBGET
integrated database retrieval system
