Pedobacter heparinus: Phep_0849
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Entry
Phep_0849 CDS
T00978
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
phe
Pedobacter heparinus
Pathway
phe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Phep_0849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phe03021
]
Phep_0849
03400 DNA repair and recombination proteins [BR:
phe03400
]
Phep_0849
Enzymes [BR:
phe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Phep_0849
Transcription machinery [BR:
phe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Phep_0849
DNA repair and recombination proteins [BR:
phe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Phep_0849
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ACU03071
UniProt:
C6Y278
LinkDB
All DBs
Position
997921..1001724
Genome browser
AA seq
1267 aa
AA seq
DB search
MANKVDQRVNFARSKHIIDYPDFLDVQLQSFREFFQIETTSDNRHTEGLFKVFAENFPIT
DSRNIFVLEFLDYFIDPPRYDIPECIDRGLTYSVPLKAKLKLSCNDAEHEDFETIIQDVY
LGTIPYMTPKGTFVINGAERVIVSQLHRSPGVFFGQSRHTNGTKLYSARVIPFKGSWIEF
ATDVNNVMYAYIDRKKKFPVTTLLRAIGYDSDKDILELFDLADEVKVSKSGLKKYIGRKL
AARVLRKWVEDFVDEDTGEVVSIDRNEVILDRDTVLEDDHIDMIIDAGVKTIILSKDDGA
SQADYTIIYNTLQKDTSNSEKEAVENIYRALRNAEPPDEETARGIIERLFFSDKRYDLGD
VGRYRINRKLKMDTPDHVKVLTKADIIAIVKYLIKLINSKEEVDDIDHLSNRRVRTVGEQ
LYAQFGVGLARMARTIRERMNIRDNEVFTPTDLINARTLSSVINSFFGTNQLSQFMDQTN
PLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHA
KINNLGFIETPYKKVENGIVSVDEPVIYLSAEDEDGKTIAQANAAYDDKGNFTTSRVKAR
YEGDFPVIEPEKLDLMDVAPNQITSIAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEA
PIVGTGLEGRVARDSRTLINAEGDGVVEYVDANEITIKYVRNDSDRLVSFEGDSKTYKLI
KFKKTNQNTCINLKPIVKKGQKVVKGQVLCEGYATENGELALGRNLKVAFMPWQGYNFED
AIVISERIVREDIFTSLHIEEFELEVRDTKRGEEELTPDIPNVSEEATKDLDENGIIRIG
AEVKEGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKTPPSIRGVVIDTKLF
SRAKKTTKAEEKSAIEKLDKKYDLAVLNLKNELVDKLFQIVNGKTSQGVYNVYKELLFPK
GAKFTQKSLSDLEYAHINPYKWTTDDDKNEQIKMLLHNYGIRVNEELGAYKRDKFAISVG
DELPSGIVQMAKVYVAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLN
PLGVPSRMNLGQIYETVLAWAGKELGVKFATPIFDGAKHDEVEDWIAKAGVPASGRTYLH
NGLTGEKFDQPTTVGIIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEM
EVWALEAFGAANILQEILTVKSDDVIGRAKTYEAIVKGENLPTPGVPESFNVLVHELRGL
GLDITLD
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaataaagtcgaccaaagagtaaattttgcacgtagtaagcatattatagattac
ccggattttctagatgtgcagttgcaatcattcagagaattttttcagatagaaaccact
tcggataaccgtcatacagagggtttatttaaggtatttgctgaaaattttccaatcaca
gattccagaaacatctttgttttggaattccttgattattttattgacccgccgcgttat
gatatacctgagtgtattgaccgtgggttaacttatagtgttccgttgaaagctaaatta
aagctttcgtgtaatgatgctgagcacgaagattttgaaaccattattcaggatgtgtat
ttagggaccataccttatatgaccccaaaaggtacatttgtgattaacggagcagagcgt
gtaattgtttcacaattgcacaggtcgccaggtgtgttcttcggccaaagccgccacaca
aatggaactaaattgtactcagcccgtgtaattccttttaagggttcatggatcgagttt
gctacagacgtaaacaacgtgatgtatgcttacattgatcgtaagaaaaagttcccggtt
accaccttattgcgtgctattggttacgattctgataaggacattttggagctgttcgat
cttgccgatgaggtaaaggtcagcaaatccggcttgaaaaaatatatcgggcgtaagctt
gcagcaagagtattgaggaagtgggtagaggattttgtagatgaagatactggtgaggta
gtttcaatagatcgtaatgaagtgatcttagacagggatactgtattggaagacgaccac
attgatatgatcattgatgctggtgtgaagacgatcatcttatctaaggatgatggtgct
agccaggctgattataccattatatataatactttacaaaaggatacatctaactctgaa
aaagaggctgttgaaaacatctatcgtgctttgcgtaatgcagaaccacctgatgaggaa
actgcaagaggtatcattgagcgtttgttcttttcggataaacgttatgacttgggtgat
gtgggcaggtaccgcattaaccgtaagttgaaaatggatactcccgatcatgtaaaagtt
ttaacgaaggctgatatcattgccattgttaagtacctgatcaaactgatcaactctaaa
gaagaggtggatgatattgatcacttgtcgaaccgtcgtgttcgtacagtaggtgagcaa
ttgtacgctcagtttggtgttggtctggcacgtatggcaagaaccatccgtgagcgtatg
aacatccgagataacgaggtatttacaccaactgatctgatcaatgcccgtactttatca
tcggtgatcaattcattttttggtacaaaccagttgtcacagttcatggaccagacgaat
cctttggcagagattacgcacaaacgtcgtttgtcggccttaggcccaggtggtctgtcg
cgtgagcgtgcaggtttcgaggtacgtgacgttcactatacgcactatggccgtttgtgt
acaattgaaacgccagagggaccaaacattggtttgatttcttctttgtgtgttcatgcg
aagatcaataatttaggtttcattgaaactccttataagaaagtagagaacggtattgtt
tcggttgatgaaccggtgatttacttatctgctgaggatgaagatggtaaaaccattgcg
caggcaaatgcagcttatgatgataaaggtaatttcaccacttcacgtgtaaaagcacgt
tatgaaggtgacttcccggttattgaaccagagaaactggacttaatggacgtggcgccg
aatcagattacttcaattgcagcttccttgattcctttccttgagcatgatgatgcgaac
agggccttgatgggatcgaacatgcaacgtcaggccgtaccattgttacgtcctgaggct
cctatcgttggtacaggtttggaaggtcgggtagcccgcgattcaagaacgctgattaac
gctgagggtgacggtgtggtggaatacgttgatgcaaatgagatcaccattaaatatgtg
cgtaatgacagtgatcgtttagtttcttttgaaggtgacagtaaaacctataagttaatc
aaattcaaaaaaaccaatcagaatacctgtatcaatttaaagccaattgttaaaaaaggc
cagaaggttgtaaaaggacaggtgttgtgtgaaggttatgctactgaaaatggtgagttg
gcattgggaagaaacttaaaagttgctttcatgccttggcagggatataactttgaggat
gcgattgtaatcagtgagcgtattgtccgtgaagatatctttacttctttacacatcgaa
gagtttgagctggaagtacgcgataccaaacgtggggaagaggaattgactccagatatt
cctaacgtttctgaggaagcaactaaggatcttgacgagaacggtatcatccgtatcggt
gctgaagtgaaagaaggtgatatccttattggcaagattacccctaagggagaatctgat
ccttcaccggaagagaagttgttgcgtgctatatttggagataaggcaggagatgttaaa
gatgcatctttgaaaacccctccatctatcaggggtgtggtaattgataccaaattgttc
tcaagagctaagaaaactactaaagcagaagaaaaatctgcaatagaaaaactagataag
aaatatgatctggctgttttaaaccttaagaatgagcttgtagataaattgttccagatt
gtgaacggtaaaacgtcgcagggggtatacaatgtttataaagagctattgttccctaaa
ggtgcgaaatttacgcagaaaagcttatcagaccttgaatacgcacacatcaatccatac
aaatggactactgatgacgacaagaatgagcagatcaaaatgttgttgcacaactacggt
attcgtgtaaacgaggagctgggtgcttacaaacgtgataaatttgccattagtgttggt
gatgaacttccatctggtattgtacagatggccaaggtttatgttgccaagaaacgtaag
ttaaaagtaggggataagatggccggacgtcacggtaacaagggtattgtagcccgtatt
gttcgtgatgaagatatgccattccttgaagacggaacacctgttgatattgtgttgaac
ccactgggtgtaccttcacgtatgaacttaggtcagatctatgaaactgtactggcatgg
gcaggtaaagaattgggtgtaaaatttgctactccgatttttgatggtgccaaacatgac
gaagtagaggattggatcgctaaggcaggagtacctgcttcgggcagaacttatttacat
aatggtttaacgggtgagaaatttgaccagccaacaactgtaggtatcatctacatgttg
aaattggggcacatggttgatgataagatgcacgcccgttcaatcggaccatactcattg
attacacagcagccattgggtggtaaagcccagtttggtggtcagcgttttggtgagatg
gaggtttgggcattggaagcatttggtgcggccaatatcctgcaagagatcttaaccgtt
aagtcggatgatgtgatcggaagggccaaaacctatgaagcgattgtaaaaggcgagaac
cttcctactccaggtgtaccggaatcatttaatgtattggtacatgagttacgtggatta
ggtttagatattacgttagactaa
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integrated database retrieval system
