KEGG   Porcisia hertigi: 94288535
Entry
94288535          CDS       T10408                                 
Symbol
JKF63_02433
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
phet  Porcisia hertigi
Pathway
phet03018  RNA degradation
phet03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:phet00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    94288535 (JKF63_02433)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    94288535 (JKF63_02433)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phet03019]
    94288535 (JKF63_02433)
   03041 Spliceosome [BR:phet03041]
    94288535 (JKF63_02433)
Messenger RNA biogenesis [BR:phet03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     94288535 (JKF63_02433)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     94288535 (JKF63_02433)
Spliceosome [BR:phet03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    94288535 (JKF63_02433)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 94288535
NCBI-ProteinID: XP_067754615
LinkDB
Position
32:271989..272339
AA seq 116 aa
MSYARRPITPIEILRNCRGKDVSIELADGETVNGTVMRTDRAMNVVIKQCTRTNADGKSF
WKSRECFVRGASVKNVRMTDSALVAVPVSVKRKATGGKGVDARKEKSAVGGKHSRK
NT seq 351 nt   +upstreamnt  +downstreamnt
atgagctacgcacgccgacccataactcctatagagatattgcgtaactgccgaggcaag
gatgtttccatcgaacttgccgatggggagacggtgaatggcactgttatgcgcaccgat
cgcgcaatgaacgtggtcatcaagcagtgcactcgtactaatgccgatggcaagtcattc
tggaagtcgcgcgagtgtttcgtacgcggggccagtgtaaaaaatgtgcgcatgacagac
agcgcacttgtagcagtgccagtctcagtgaaacgaaaggcgacaggcggaaaaggcgta
gatgcccgaaaagagaaatctgcagtaggtggaaagcattctcggaagtag

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