Pseudonocardia sp. HH130630-07: AFB00_25885
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Entry
AFB00_25885 CDS
T04486
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
phh
Pseudonocardia sp. HH130630-07
Pathway
phh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
phh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AFB00_25885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phh03400
]
AFB00_25885
Enzymes [BR:
phh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AFB00_25885
DNA repair and recombination proteins [BR:
phh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AFB00_25885
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANY10400
UniProt:
A0A1B1ZXF8
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All DBs
Position
5449063..5450007
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AA seq
314 aa
AA seq
DB search
MDRRQRTAANRDGHGRAALSNPDKVLYPATGTTKADVLGHYLTVAEAMLPHLDGRPTTLK
RWPDGVEGSSFFEKNVSRHAPSWLRTARVGTPGGRSETADFAVLADAEGLAWAANLAALE
LHVPQWRLGPRDGRHPPDRVVFDLDPGEGTTVLDCCRIALRLRAVLDEFGLQAWPSTSGG
KGMQLYVPVRVTEAERTAEFAREVAERLAAEDPKDTTAVMARARRRGKVFVDWSQNNTAK
TTIASYSLRGRERPTVATPITWDEVEACRDPEDLVFTCADLPARLDTHGDLMRPLLDTTG
FRLPRGGAVTRLGG
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
gtggaccggcgccagcgaacggcagcgaaccgagacggccacggccgggccgcactgagc
aacccggacaaggtcctctaccccgccaccgggacgaccaaggccgacgtcctgggccac
tacctcaccgtcgcggaggcgatgctgccgcacctggacggccgtcccacgacgctcaag
cgctggccggacggggtggagggatcgtcgttcttcgagaagaacgtgtcccggcacgcc
ccgtcgtggctgcgtacggcccgggtcgggacgcccggcggccgctcggagaccgccgac
ttcgccgtgctcgccgacgccgagggactggcctgggcggcgaacctggccgcgctggag
ctgcatgtcccgcagtggcggctcggtccccgcgacggccggcacccgccggaccgcgtc
gtgttcgatctcgaccccggtgagggcacgacggtcctcgactgctgccggatcgcgttg
cggttgcgtgcggtgctggacgagttcgggttgcaggcgtggccctcgacgtcggggggc
aaggggatgcagctctacgtcccggtccgggtcaccgaggccgagcggaccgcggagttc
gctcgggaggtcgccgagcggctcgcggccgaggatccgaaggacacgaccgcggtcatg
gcccgggcccggcgccggggcaaggtgttcgtcgactggagccagaacaacaccgccaag
acgaccatcgcgtcctactcgctgcgcgggcgggagcgccccaccgtggccaccccgatc
acctgggacgaggtggaggcctgccgggacccggaggatctggtgttcacctgcgccgac
ctgcccgcgcggctggacacccacggggatctcatgcgaccgctgctcgacaccacgggt
ttccggttgccccgtggtggggcggtcacgaggctgggaggctga
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