Phreatobacter cathodiphilus: C6569_11575
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Entry
C6569_11575 CDS
T05356
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
phr
Phreatobacter cathodiphilus
Pathway
phr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
phr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C6569_11575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phr03021
]
C6569_11575
Transcription machinery [BR:
phr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C6569_11575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Ins_allergen_rp
Sec8_N
Motif
Other DBs
NCBI-ProteinID:
AVO45653
UniProt:
A0A2S0NCK4
LinkDB
All DBs
Position
complement(2368826..2370817)
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AA seq
663 aa
AA seq
DB search
MATKATEKPEGADQETEGPDGPLLDLSDAGVRAMIKRAKKRGYVTIDEINAVMPAASFTS
DQIEDMNAMLSEMGINVVDNDDAAEDGEGEEQAEADEPDGELQEASPRAVVKSERASEPL
DRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDEL
NEGKIYLRDIIDLEATYAGPDAKNAPMVTEGEAPIAPQAEGDGEGLPPGAEGDLDEDDME
NAVSLAAMEAELKPKVLEIFDTIADEYKKLRRLQDQNVENRLNDTKLSPSQERRAKKLRE
DLVDHVKSLSLNSARIEALVEQLYDINKRLVGYEGRLLRLAESYGVDRMSFLKEYQGSEL
DPNWIRRVASLGARGWKSFVAEEKETVKEIRAEIQALATETALEIGEFRKIVQMVQKGER
EARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY
ATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLGMP
LEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLAS
LTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSF
LDN
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggcaaccgagaaaccggaaggtgcggatcaggagacggaaggcccggac
ggcccgctcctggacctctccgacgccggcgtccgggcgatgatcaagcgtgccaagaag
cgcggctatgtgaccatcgacgaaatcaatgccgtgatgcctgcggcctcgttcacctcg
gaccagatcgaggacatgaacgccatgctctcggaaatgggcatcaacgtcgtcgacaac
gacgatgccgccgaggacggtgagggagaggagcaggccgaggccgacgagccggacggc
gagctgcaggaggcctctccgcgcgccgtggtgaagtccgagcgcgcctccgagccgctg
gaccgcaccgacgaccccgtgcgcatgtatctgcgcgaaatgggctcggtggagctgctc
tcccgcgagggcgagatcgccatcgccaagcgcatcgaggccggccgcgaggccatgatc
gccggcctctgcgagagcccgctgaccttccaggccatcatcatctggcgggacgagctc
aacgagggcaagatctacctgcgggacatcatcgacctcgaggccacctatgcgggcccc
gacgcgaagaacgcgccgatggtgaccgaaggcgaggcgccgatcgccccccaggccgaa
ggcgacggcgaaggcctgccgccgggcgccgagggcgacctggacgaggacgacatggag
aacgccgtgtcgctcgccgccatggaggcggagctgaagccgaaggtgctcgagatcttc
gacaccatcgccgacgagtacaagaagctgcgccgcctgcaggaccagaacgtcgagaac
cggctgaacgacaccaagctgtcgccgagccaggagcgccgcgccaagaagctgcgcgag
gacctggtcgaccacgtgaagtcgctgtcgctcaattcggcgcgcatcgaggcgctggtc
gagcagctctacgacatcaacaagcggctcgtgggctatgaggggcgcctcctgcgtctc
gccgagagctacggcgtcgaccgcatgtccttcctgaaggaatatcagggctccgagctc
gatccgaactggatccggcgcgtggcctctctcggtgcgcgcggctggaagagcttcgtc
gccgaggagaaggagacggtgaaggagatccgcgccgagatccaggcgctggcgaccgag
acggcgctggaaatcggcgagttccgcaagatcgtccagatggtgcagaagggcgagcgc
gaggcccgtcaggccaagaaggaaatggtggaggcgaacctccgcctcgtcatctccatc
gccaaaaagtacacgaaccgcggcctgcagttcctcgacctcatccaggaggggaacatc
ggcctgatgaaggcggtcgacaagttcgagtaccgccgcggctacaagttctcgacctat
gccacctggtggatccgccaggcgatcacccgctcgatcgccgaccaggcccgcaccatc
cgcatccccgtgcacatgatcgagacgatcaacaagatcgtccgcacgtcgcggcagatg
ttgcacgagatcggccgcgagccgaccccggaggagctcgccgagaagctcggcatgccg
ctggagaaggtgcgcaaggtcctgaagatcgccaaggagccgatctccctcgagacgccg
atcggcgacgaggaggattcacacctcggcgacttcatcgaggacaagaacgccatcctc
cccatcgacgcggcgatccagagcaatctgcgcgagacgacgacgcgcgtgctggcatcg
ctcacgccgcgcgaggagcgcgtgctgcgcatgcgcttcggcatcggcatgaacaccgac
cacacgctcgaagaggtcggccagcagttctcggtgacccgcgagcgcatccgccagatc
gaggccaaggcgctgaggaagctgaagcatccgagccggtccaggaagctgcgcagcttc
ctcgacaactga
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