Paraburkholderia hospita: C2L64_16890
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Entry
C2L64_16890 CDS
T05305
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phs
Paraburkholderia hospita
Pathway
phs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C2L64_16890 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phs03021
]
C2L64_16890 (rpoC)
03400 DNA repair and recombination proteins [BR:
phs03400
]
C2L64_16890 (rpoC)
Enzymes [BR:
phs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C2L64_16890 (rpoC)
Transcription machinery [BR:
phs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C2L64_16890 (rpoC)
DNA repair and recombination proteins [BR:
phs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C2L64_16890 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
PYNP_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
AUT69783
UniProt:
A0AAJ4VZC2
LinkDB
All DBs
Position
1:complement(3705378..3709619)
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVETLRSELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAVNAKGEGLTFTGVSEALRAYENK
EVELASRVNVRITEMVHNEDKSEGAPAFVPKITLYATTVGRSILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLSTEPVTDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVTVADVVNPESQETLYETGTLLDEDAVEEIERLGIDEVRVRTPLTCETRYGLC
AACYGRDLGRGSSVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTSTMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGAQIKAG
TQLATWDPLTRPIITEWGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKS
VRPQVKLLDANGEEVKIPNSEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTEAQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQISDNGDTRFIPGEQVERSDMLDENDRMVAEDKRPATYENILLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKTKEM
ADRERFDQIAAEEAFEFGTPETPAAEQTPHTNE
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatctattcaagcaagtccaacaggaagaagtttttgacgcgatc
aagatcggtctggcctcgccggacaagatccgttcgtggtcgttcggtgaagtcaagaag
ccggaaacgatcaactaccgcaccttcaagccggagcgggatggtctgttctgcgcgaag
attttcggtccgatcaaggactacgaatgcctttgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgtcgaagtgacgctcgcgaaggtgcgtcgcgaa
cgcatgggccacatcgaactggcctcgcctgtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcatatgtggtgatcgatccgggcatgacgccgctgaaggcgcgtcagatcatg
acggaagaggattactacaataaggtcgaagagtacggtgacgaattccgcgctgaaatg
ggcgcggaaggcgtgcgcgaactgctgcgcgcgatcaacatcgacgagcaggtcgaaacg
ctgcgctcggagctgaagaacacgggttcggaagcgaagatcaagaagtacgcgaagcgt
ctgaaggtgctcgaggccttccagcgttcgggcatcaagcccgagtggatgattctcgag
gtgctgccggtgctgccgccggaactgcgtccgctggttccgctggacggcggtcgtttc
gcgacttcggacctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgtctgctcgaactgaaggcgcctgaaatcatcgtccgcaacgaaaagcggatgctgcag
gaagccgtcgattcgctgctcgacaacggccgtcgcggtaaggcgatgacgggcgcgaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggtaagggcggtcgtttccgtcag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacg
ctgaagctgcaccagtgcggtctgccgaagctgatggcgctcgaactgttcaagccattc
atcttcaacaagctggaagtgatgggtgttgctaccaccatcaaggctgcgaagaaggaa
gtcgagaaccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgagcatccg
gtcatgctgaaccgcgcgccgacgctgcaccgtcttggcattcaggctttcgaaccggtg
ctgatcgaaggtaaggcaatccagctgcacccgctcgtttgcgcagcgttcaacgccgac
ttcgacggtgaccagatggctgttcacgttccgctgtcgctcgaagcgcagatggaagcg
cgtacgctgatgctggcgtcgaacaacgtgctgttcccggctaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctcggtttgtactacgcgactcgtgaagcagtgaacgcc
aagggcgaaggcctgacgttcacgggcgtctcggaagcgctgcgtgcctacgagaacaag
gaagtcgagctcgcctcgcgcgtcaacgtgcggatcaccgaaatggtccataacgaagac
aagtcggaaggtgcaccggcgttcgtgccgaagatcacgctgtacgcgacgaccgtcggc
cgttcgatcctgtcggaaattctgccgccgggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgtctgatcaacaccgcattccgcaagtgcggtctgcgt
gaaaccgtgattttcgccgaccagttgatgcagtcgggtttccgtctggcaacgcgcgct
ggtatctcgatctgcgtcgacgacatgctcgtgccgccgcagaaggaaaccatcgtcggc
gacgccgcgaagaaggtgaaggaatacgaccgtcagtacatgtcgggtctcgtcacctcg
caagaacgctacaacaacgtggtcgacatctggtcggcgacgtcggaagcggtcggcaag
gcgatgatggaacagctgtcgacggaaccggtcacggatcgcgacggcaacgaaacgcgt
caggaatcgttcaactcgatttacatgatggcggactcgggtgctcgtggttccgcggtt
cagattcgtcagctggccggtatgcgtggcctgatggcgaagccggacggctcgatcatc
gagacgccgattacggcgaacttccgtgaaggcctgaacgtgttgcagtacttcatctcg
acccacggcgcacgtaagggtctggctgatacggcactgaagacggcaaactcgggttac
ctgacgcgtcgtctcgtcgacgtgacgcaggatctggtggtggtcgaggacgattgcggt
acgtccaacggcgtcgccatgaaggcgttggttgaaggcggtgaagtcgtcgaagcgctg
cgtgaccgtatcctcggtcgcgtgacggtggctgacgtcgtcaatccggaatcgcaggaa
acgctgtacgaaacgggcacgttgctcgacgaagacgcggtcgaagaaatcgaacgcctc
ggcatcgacgaagtgcgtgtgcgtacgccgctgacttgcgaaacgcgctacggtctgtgc
gcagcctgctacggtcgcgacctgggccgcggctcgtcggtcaacgtcggtgaagcagtc
ggcgtgatcgctgcgcagtcgatcggtgagccgggcacgcagctgacgatgcgtacgttc
cacatcggtggtgcggcatcgcgtgcggcagtggcgtcgtcggtcgaagcgaagtcgaac
ggtacggtgcgtttcacgtcgacgatgcgttacgtgacgaatgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaagcgatgatcaccgacgatcacggccgcgagcgcgagcgt
cacaaggtgccgtatggcgcgacgctgctgcaactcgacggcgcgcagatcaaggcgggc
acgcaactggccacgtgggatccgctgacgcgtccgatcatcaccgagtggggcggtacg
gtgaagttcgaaaacgtcgaagaaggcgtgacggtcgcaaagcagatcgacgacgtgacg
ggtctttcgacactcgtcgtgatcgacgtgaagcgccgcggctcgcaggcttcgaagagc
gtgcgtccgcaggtgaagctgctcgacgcgaacggcgaagaagtgaagatcccgaactcg
gagcactcggttcagatcggcttccaggtcggcgcactgatcaccgtgaaggatggtcag
caggttcaggtgggtgaagtgctcgcacgtatcccgactgaagcgcagaagacgcgtgac
attacgggtggtctgccgcgtgtggcggaactgttcgaagcacgttcgccgaaggacgca
ggtatcctggcggaagtcacgggtacgacgtcgttcggtaaggacacgaagggcaagcag
cgtctcgttatcacggacctcgaaggcaatcagcacgagttcctgatcgcgaaggaaaag
caggttctggtgcacgatggtcaagtcgtcaacaagggcgaaatgatcgtggacgggccg
gcggatccgcacgacatcctgcgtctgcagggtatcgaagcgctgtcgcgctacatcgtg
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacattgaa
gtgatcgtgcgtcagatgctgcgtcgcgtgcagatcagcgacaacggcgatacgcgcttc
atcccgggtgagcaggtcgagcgttcggacatgctggacgaaaacgatcgcatggtcgcg
gaagacaagcgtccggcaacgtacgagaacatcctgctgggtatcacgaaggcgtcgctg
tcgaccgattcgttcatctccgcggcatcgttccaggaaacgacccgcgtgctgacggaa
gcggcgatcatgggcaagcgcgacgatctgcgtggcctgaaggaaaacgtgatcgtcggt
cgtctgattccggccggtacgggtctcgcgttccacaaggcgcgcaagaccaaggaaatg
gcggatcgcgagcgtttcgaccagatcgctgcagaagaggccttcgagttcggtacgccg
gaaaccccggctgccgagcaaacgccgcacaccaacgagtaa
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