Primulina huaijiensis: 140959104
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Entry
140959104 CDS
T11038
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
phua Primulina huaijiensis
Pathway
phua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140959104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phua03019
]
140959104
Messenger RNA biogenesis [BR:
phua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140959104
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140959104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
140959104
NCBI-ProteinID:
XP_073272963
LinkDB
All DBs
Position
15:3495082..3515560
Genome browser
AA seq
2421 aa
AA seq
DB search
MIPLSTKLSGHIRFLIQSLDDSDSGSDFESIFLELCECTSHGIEGSILLLQICLDHLHIY
QKDSNNMEMHPIFASLFKHIMDKPNFSTVFCQSLSTATINGEYLQNLSDGLHLLPLDKIG
MGLALSDSENLETRMCGKNFCMSQIAELSANPMASDSSELIQQILVFLSQSEGLSKYVDS
FMQMLSLVQLEEGAQFILAPFLSDELRDENFFRHLDLFNEGDEDDFDAILAEMEKESSMA
DMMNELGYGCTANVSQCKEMLSLFLPLSDVTIAKILGTIARTYAGLDDSQNVFSTFCSAL
GVSIGLEQPSLNSWNVDVLVDSIKQLSPGINWINVMEKLDHENFYIPNETAFSFFMSVYK
YACQDPFPLHAICGFIWKNVEGQLSFLKYAISMPPEVFTFAHSERQMAYNDVVTGHKFQS
GQFNHAWTCHDLLEVLCQLAERGHAIFVRSAIKNPLNHCPEVLLLGMARVNTAYNLIQHE
VSSAVLPMLLKNVLGNDLILHLWHDNPNMLLRGFVDATNIDPDNYSRILDACQELKILSS
VLDMIPSYFGIRLATLASRKEFMDLENWLDDKLVAYKDAFYEECLKFLKEVQLGAQDVSS
NRFHPTGALVNTYLDAYPSFLKVLRSHVGVISSSHLSEEMEKLHSTSMLGNTRLKEDGTA
DSTSSDSYADDIEKEANSYFHQMFSGLLAIDAIIQMLTRFKESPERREQLIFECMIANLF
EEYKFFSKYPERQLKIAAGLFGSLIKHQLVTHLTLGIALRAVLDALRKPADSKMFVFGTK
ALEQFVDRLIEWPQYCNHILQISHLRVTNADLVTFIERALARISAAHTDQDIVNNDTTDL
HHGPIQPSSTNVETPSSSFLSSGLGGSQTGPSVVPTVQLPQRSTSSLDERKLPVALSNYL
KPAQSTAGQPAVAPSSDAAGIQKSQSSLGALTHASSPGFPRSSRSTSARFGSALNIETLI
TAAERREIPIETPASEIQDKISFIINNLSAANIEAKAKEFTEILNERYYPWFAQYMVMKR
ASIEPNFHDLYLKFLDKVNLKSLNKEVVQATYENCKVLLGSELIKSSSEERSLLKNLGSW
LGKITIGKNQVLRAREIDPKSLIVEAYEKGLMIAVIPFTSKILEPCSNSLAYQPPNPWTM
GILGLLVEIYAMPNLKINLKFDIEVLFKNLGVDLKEVTPTSLLKDKIREVEGNPDFSNKE
VGSSQPQMLNEVKSGIIPTLNQVEQPLDVASPHPGAHSHIISQYAAPLHTLSGTLADDEK
LTSPGVTDQLFSAQGLPQGQSQFSVNQIPAPASNMEQQVVINKKLHALGLYLNFQSVLPI
AMDRAITEIVSSIVQRSVSIATQTTKELVLKDYALEPDETLIRNAAHLMVARLAGSLAHV
TCKEPLRGSISSQLRGLLQGLSISNELLEQAIQLVTNDNLDLGCAVIEQAATEKAIQTID
GEIAQQLTIRRKHREGAGLTYFDSSLYAQGQMGVLPDALRPKPGRLSHSQQRVYEDFARL
PWQNWSSQGSNAVPVVPIASSGSGGLSRQFASASDQITAGIYTSGIANAGISVIPQNLKI
GYEELDANASHLPSVSSTHIATVDTPASQSLENDVSSFPLTSTPELHLTGPSNYLKEPVA
SVQSVIPTLASDRLGSNVLEPLLTTGDALDKYQTISEKLENLMSSDAKEAEIEGVIAEVP
AVILRCISRDEAALAVAQKAFKGLYEKAANRAYVSAHLAILAAIRDVSKLVVKELTSWVM
YSDEDRKFSKDITVGLIRSELLNLAEYNVYMAKLIDAGRNKAATEFAISLIQTIVVNDSK
VISELHNLVDALAKLAARPGSPESLQQLVEIAKNPTANLTTLPTVIVGKEDNMRSSKDKK
VSGLPGSSREDYSATELVEPDPAGLHEQVSMLFAEWYQICELPGANDAACARYVLHLQQR
GLLNGDDTSEHFFRRLTELSVSHCLSSEVINSSSSQSHLGQPLSFLAIDIYAKLVFSILK
FFPVDHGPSKLSLLLKILAVTVKFIQKDAAEKTSSFNPRPYFRLFINWLLDLCSLDPVFD
GTNFQVLTALANAFHALQPLKIPGFSFAWLELVSHRSFMPKLLTVNAQKGWPYFHRLLVD
LFQFMEPFLRLADLGEPIQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRN
IILSAFPRNMRLPDPSTPNLKIDLLAEISHTPRILSEVDAALKTKQIKNDVDEYLKTRQQ
GSSFLTELKQKLLLTPSEGARSGSRYNVPLMNALVLYVGMQAIQQLQSRVPPYTQSMASM
TAFLVSAALDIFQTLILDLDSEGRYLFLNAIGNQLRYPNNHTHYFSFILLYLFNESNQEA
FQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRS
CGGPKPVDDSVVSGGIPDNMH
NT seq
7266 nt
NT seq
+upstream
nt +downstream
nt
atgattccgctgtcaacgaaattgtccggtcatattcggtttctcatccagagtttggat
gactccgactcgggctccgacttcgaatcaattttcctagagctttgcgagtgtacttca
catggaatcgaaggaagcatattgctactccaaatctgtttggatcacttgcatatttat
cagaaagattcgaacaatatggagatgcatccaatatttgcttcactgtttaaacatatt
atggataaacctaatttcagtacagtcttctgtcaatcattgagtactgcaactataaac
ggggaatatctgcagaatctttctgacggactgcacttattgccattagataaaattgga
atgggccttgctctgtctgattcagaaaaccttgagaccagaatgtgcgggaaaaacttt
tgcatgagtcagattgcagaattgagtgccaatcccatggcttcagattcttctgagcta
attcagcaaattctggtgtttctcagtcaatccgaaggtctatctaagtatgtagattcg
ttcatgcaaatgttatctcttgtgcagttggaggagggagcccaatttatcttagcccct
ttcctttctgatgaattgcgtgacgaaaatttcttcaggcatttggatttattcaacgaa
ggcgatgaagatgattttgacgccattctagcagaaatggagaaggaaagtagcatggct
gatatgatgaacgaattaggctatggatgcactgccaatgtctcacaatgcaaagaaatg
ttgtctttattcttgcctctttctgatgtcactattgcgaagatacttggtacaattgcc
cgaacttacgcaggtcttgatgacagtcaaaatgtgttttctacattttgttccgcgctt
ggggttagtattggtttggagcaaccgtctctgaactcttggaatgtagatgtactagtg
gattcaataaagcagctctctcctggaattaactggataaatgtcatggagaagctggat
cacgagaatttttatatccctaatgagacagcattttccttttttatgtccgtgtataaa
tatgcatgccaggatccatttcctcttcatgccatttgtggctttatttggaagaatgtc
gagggtcagctatcattcttaaagtatgccatctcaatgccacctgaagtgtttacattt
gcacattctgagaggcaaatggcctacaatgatgttgtgacagggcataagtttcaatct
ggtcagttcaatcatgcttggacctgccacgacctcctcgaggtgttatgccaactagct
gagaggggccatgcaatttttgtgcgatctgctattaagaatcctcttaaccactgccct
gaagttttgcttcttgggatggcccgtgtgaatacggcatataatcttatccagcatgaa
gtgtcttctgctgttcttcctatgctactaaaaaatgttttgggaaacgatttaatactt
catctgtggcatgacaacccaaacatgttattgcgaggattcgtagatgccacaaacatt
gatcctgacaactatagtaggattctggatgcttgccaggaattaaagatcctatcttcg
gtattggatatgattccttcttattttggaattcgactggctacccttgcttctagaaaa
gaattcatggatcttgagaactggttggacgataaattagttgcatacaaagacgctttc
tatgaggagtgcctcaagtttctaaaggaggttcagctcggagctcaggatgtttcttct
aatcgctttcaccccactggcgctcttgtgaatacttatttggatgcatatccctctttc
ttaaaggtccttcggtctcatgttggtgtcatttcgtccagtcatttgtctgaggaaatg
gaaaaattgcattccacttccatgcttggtaatacacgacttaaagaggatgggactgct
gactctacctcttctgatagttatgctgatgatattgagaaagaagcaaattcatatttc
catcaaatgttttcgggtctactggcaattgatgcgattattcaaatgcttactcgtttc
aaggaatctccggagagaagggaacaattgatttttgagtgcatgattgctaatctattc
gaggagtacaagttcttttccaaataccctgaaaggcagttgaaaatcgccgctggtctt
tttgggtcactcatcaagcatcaacttgtgacacatctcacactcggtatcgctttacga
gctgttttagatgctctgcggaaacctgcagattcaaaaatgtttgtttttgggaccaag
gcactggaacagtttgttgaccgcctcatagagtggccacagtactgcaatcatattcta
caaatatctcatttgcgtgttacgaatgcggaccttgttacctttattgagagggcactc
gctaggatttcagcggctcatactgaccaagacattgtcaataatgacactactgatctt
catcatggtcctatccagccatcttctactaatgtggagactccgagctcgtcttttttg
tcatctggactgggaggttcacagactgggccgtcagtcgtccctacagtccaacttccc
caaagatctacaagctctttagatgagagaaaacttcctgtggcactgtctaattaccta
aagccagcacaatcaactgccgggcagcctgctgttgctccttcaagtgatgcagctggc
attcaaaagtctcagagttctctcggtgcattaacgcatgcttcctctcctggttttcca
cgttcatctcgatctacctcagcaaggtttggctctgccttaaacattgaaactcttatc
acggcagcagagagaagagaaattccaatagagactcctgcttctgaaattcaggataag
atatcttttatcataaataacttgtctgctgccaatattgaggctaaagctaaagaattt
actgagattctgaatgagcgttattatccctggtttgctcagtatatggttatgaagaga
gcaagcattgagccaaattttcatgatctgtacttaaagttccttgataaagtaaatctg
aagtctctgaacaaagaggttgtacaagccacttatgagaactgcaaggtacttctaggg
tcagaacttataaagtcaagttcagaagagcgttcattgctgaaaaatttaggaagctgg
cttgggaagattactattgggaagaatcaagttttaagggcacgagagattgatcccaaa
tctctgattgtggaggcgtatgagaagggacttatgattgctgtcattccttttacatcc
aagattctggaaccatgttctaacagtctagcttatcaacctccaaacccttggacaatg
ggtatacttggattgcttgttgagatttatgcaatgcctaatttaaaaataaatctgaag
tttgatatcgaggtcctgttcaagaaccttggtgtagatttaaaagaagtaacacctacg
tctcttctcaaggacaaaattcgagaagttgaaggtaatcctgatttttcgaataaagaa
gtaggatcttcacaacctcagatgttaaatgaggtgaagtctggaataatacctacacta
aaccaagttgagcaaccactggatgttgcttcacctcatccgggtgctcattcacatatc
atatctcagtatgcggctcctcttcatactctatctggcacactggctgatgatgagaag
ctgacaagtccgggagtaacagatcagcttttttccgctcaaggtcttccccaaggacag
tcccaattttcagttaatcagattcctgcaccagcctctaatatggaacagcaagttgtt
atcaataaaaagctccatgcattgggcctgtacttgaatttccagagtgtacttccaatt
gccatggatagagctatcacagagatagtgtccagcatcgtgcagcgaagtgtttccatt
gcaactcagacaacaaaggaacttgttttgaaggactacgctttggaacctgatgaaacc
ctcatacgtaatgcagcacatttgatggttgcaaggttggctgggagtctagcacatgtg
acatgcaaggaacctttgcgtggttccatatcaagccagcttaggggtttgcttcagggc
ttgagcatatcgaatgaacttttagagcaagcgattcaacttgtgaccaatgacaatctg
gaccttggctgtgcagtgattgaacaagctgccactgaaaaggcaattcaaactattgat
ggggaaattgcccagcaactcactatcaggaggaaacatagagagggtgctggtcttaca
tattttgactctagcctgtatgcccaaggtcaaatgggtgttttgccggacgcccttcgc
cctaaacctggacgcctttcacactcacagcagcgtgtttatgaggattttgctcggtta
ccgtggcagaattggtccagtcagggttcaaacgcagtacctgtggttcccattgcttca
tctggcagtgggggactctctcgacaatttgcatccgcatctgaccaaataactgctggc
atttacacatctggcattgcaaatgcaggaattagtgtcattccccagaatctgaaaatt
ggttatgaggagttagacgccaatgcatcccatcttcctagtgtttcttccactcatatt
gcaactgttgatactcctgcttcgcaaagtcttgaaaatgatgtttcttcgttccccctc
acttctacacctgaattgcatttgacaggaccttctaattatttaaaagaaccagtggct
tcggtgcagtctgttattccaactttggcatcagatcgtcttggaagcaatgttttggag
cctttattaaccacaggtgatgcgctggataagtaccagactatttcagagaagcttgaa
aatctaatgagtagtgatgccaaggaggcagaaatcgagggagttatagctgaggttccc
gctgttatcctcaggtgcataagccgagacgaggcagctttggcagttgcccaaaaggct
ttcaagggcttatatgaaaaggcagcaaacagagcttatgtcagtgctcatctagcaatc
ttggctgccattcgtgatgttagcaagcttgttgtgaaggagctcactagttgggtgatg
tactctgatgaggaccggaagttcagtaaggatatcactgttggtcttattcgcagtgaa
ttattaaatcttgctgaatataacgtctatatggcaaagcttattgatgcgggaaggaat
aaggctgccacagaatttgccatttctcttatccaaacaatagttgtcaatgattctaaa
gtgatatcagaactacacaatcttgttgatgctctggcaaagcttgctgctaggcctgga
tctcccgaatcactgcaacagctagttgagatcgctaagaaccctactgcaaatcttaca
accttgcctactgtgattgttgggaaggaagacaatatgagatcatctaaagacaagaag
gtctctgggctacctgggtcaagcagggaagactactcggccacagaattggtggaacca
gatcctgctggtctgcatgaacaggtctccatgctgtttgcagaatggtaccaaatatgt
gaacttcctggagcaaatgatgcagcttgcgctcgttatgtcttacacttacagcagagg
ggcctgcttaatggggatgacacctcagagcattttttccgccggctcacggaactttca
gtgtcacactgcttatcttctgaggtgattaattctagctcttcccagtcacatttggga
caacctttgtcattccttgctattgacatctatgcgaaattggtcttctcaattctgaag
tttttccctgttgatcatgggcctagcaaactctctcttttgcttaagattcttgctgtg
accgtgaagtttattcaaaaagatgctgcagagaagacgtcctcgtttaatcccaggccg
tattttaggttgtttattaattggttgttggatttgtgttccttggacccagtttttgat
ggcacaaatttccaggttttgactgctttagcaaatgctttccatgctcttcagcctcta
aagattccagggttcagctttgcttggctcgagttggttagtcatagaagtttcatgcca
aaattactcacggtaaatgcacagaagggatggccttattttcatagacttcttgtagac
ttgttccagttcatggagccattcctgagacttgctgacctgggagagccgatacaattt
ctttataaagggacactcagggtcttgttggtgctactccacgatttccccgagttcctt
tgtgattatcatttcagcttctgtgatgtcattccaccaagttgcatacagatgcgaaat
ataatcctcagtgcatttcctcggaatatgaggttgcctgatccatctacccccaactta
aagattgacctactggcggaaatcagtcatacaccacgaattctctctgaagttgatgca
gctcttaaaacaaaacagatcaagaatgatgtggatgagtatctcaagacaaggcaacaa
gggtcttcatttcttactgagttgaagcagaagcttttgcttactccatctgaaggagct
cggtctggcagtcgttacaatgttcctctcatgaacgctcttgtcctttacgttgggatg
caggccatccaacagctgcaatccagagtcccaccatacacgcaatccatggctagcatg
accgcattcttggttagtgctgctctggacattttccagaccttgatactcgatctggac
tcagagggccgttacctgttcttgaatgctatcgggaaccagttgcgctatccaaacaac
cacactcattacttctctttcatccttctttacctgtttaacgaatcaaatcaggaagca
tttcaagagcaaatcacccgggtcctgcttgagcgattaattgttaataggcctcatcct
tggggacttctaattacgtttattgagctcatcaagaatccccgatacaacttctggagc
cggtctttcacgagatgtgcacctgagattgagaagctttttgaatcggtgtcaagatca
tgtgggggtccaaaaccagtcgacgatagtgtggtctctggtggtatacccgacaatatg
cactaa
DBGET
integrated database retrieval system
