Primulina huaijiensis: 140987854
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Entry
140987854 CDS
T11038
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
phua Primulina huaijiensis
Pathway
phua03013
Nucleocytoplasmic transport
phua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phua00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140987854
03015 mRNA surveillance pathway
140987854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phua03019
]
140987854
Messenger RNA biogenesis [BR:
phua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
140987854
mRNA cycle factors
P-body specific factors
140987854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
140987854
NCBI-ProteinID:
XP_073312653
LinkDB
All DBs
Position
11:complement(18509761..18519052)
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AA seq
509 aa
AA seq
DB search
MKGMLDRTKVVVRHLPPTISQSNFVEQIDSRFSGRYRWLSFRPGKSSQKHVTYSRASIDF
NKSDDVLEFAEFFNGHVFVNEKGTQYKTIVEYAPSQRVPKNWSKNDGREGTILKDPEYLE
FLDFLAKPTENLPSAEVQLERKEAERVGAPKGIPIVTPLMDYVRQKRAARGGARRTILNG
KPTRRVSGMLSRNTGSGSSRGGSEKRTSTMYVLRDSSKGASSKEKSSSVPVFKQDEQRLL
DKSVTSAAVSRTDSLEGEGGGSGSSEIGKQKILLLKGKEKETSNQQNAAPHANNLHSPIP
LKQNHRRESNDRIIRSVLNRDIRQNQTLSGSQSEHRIRNINQDRDKKPPRPTNVQSFQKN
ANGSPEGKLASHDSQAFHTEKEERRTRNRDRPDRGVWAPIRRSDGSHASDESLSSSIFQT
SQVVDSSEDIKNDVLIMRGGEFRHIGSGRGGHKSVGNGSYRQGGRRGSAYNIKDADGSQV
EGKFPKRGGSSGHVSHEKQLWVQKSSPGS
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaaggggatgctagatcgaacgaaggtggtggtgcggcatttgccgccgactatttct
cagtcgaatttcgtcgagcaaatcgattctcgcttctctggtcgctaccgttggctttct
tttaggccgggcaagtcaagccagaagcatgtaacatattcaagagcaagcatcgacttt
aataaatcagatgatgtgctagagttcgctgagttttttaatggccatgtttttgtcaat
gagaaagggacccagtataaaacaattgttgagtacgccccttcacagcgtgttccaaag
aattggtcaaagaatgatggtcgtgaagggactatattgaaagatcctgaatatttggag
ttccttgattttcttgcgaagcctactgagaatcttcccagtgcagaggtacagctggag
agaaaggaagcagaacgagtaggtgctccaaagggtattcctatagttacccctttaatg
gactatgttcgtcagaaaagagctgctcggggtggagctcggagaaccattttgaatgga
aagccaacgaggagagtcagtggaatgctctccaggaatacaggctcaggatcttcaaga
ggtggctcagaaaaaagaacttctaccatgtacgtgttgagggacagctcaaagggtgca
agcagcaaggagaaatcatcttccgtaccggtttttaaacaggatgagcaacgactcttg
gacaaatctgtcacttcagctgcagtctccagaactgattcattggaaggggaaggtggc
ggctcaggttcctctgaaattgggaagcagaaaatcttacttctgaaagggaaagaaaag
gaaacctctaatcagcagaatgcagctcctcatgccaacaatttgcacagtccaattcct
cttaaacagaatcatcgacgcgaatctaatgataggatcatcaggagtgtccttaacagg
gatattcggcaaaatcaaacattatctggatctcaatccgaacaccgaattcgcaatata
aatcaggacagagacaagaaacctcctcgtcccacaaatgtgcagtcatttcagaagaat
gcaaatgggtctcctgagggtaagttagccagccatgattcgcaagcttttcatactgag
aaagaagaaagacgtacaaggaacagggatagacctgatcgtggtgtttgggctcctatt
cgacgatcggatggatcacatgcaagtgacgaatctttatcatcctctattttccaaacg
tcccaagtagtggattcttctgaagatattaaaaatgatgtgttgattatgcgcggtggt
gagttcagacatatcggaagtggtcgtggaggtcataagtctgttggcaatggttcttat
aggcaagggggtcggcgtggttcggcatataatatcaaggatgccgatggctcccaagtg
gaagggaagttcccaaagagaggaggttcttctggccatgtttcccatgagaaacaattg
tgggtccaaaagtccagtcctggttcatag
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