Pangasianodon hypophthalmus (striped catfish): 113526243
Help
Entry
113526243 CDS
T05759
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113526243 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phyp03041
]
113526243 (sf3b1)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113526243 (sf3b1)
Spliceosome [BR:
phyp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
113526243 (sf3b1)
Complex B
113526243 (sf3b1)
Complex C
U2 SnRNP specific factors
113526243 (sf3b1)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
113526243 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_EF3_N
HEAT_MROH2B_C
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
TPR_IMB1
VPS15-like_hel
Adaptin_N
Phage_T7_Gp15
UNC45-central
Motif
Other DBs
NCBI-GeneID:
113526243
NCBI-ProteinID:
XP_026768914
LinkDB
All DBs
Position
Unknown
AA seq
1314 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKAALLEEGAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEDDDEEDSSTTLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKISDREDEY
KRRRQKMIISPERHDPFADGGKTPDPKMPARSYMDVMKEQHLSKEEREIRLQMAEKAKSG
DLKAVNGSAASQAAAPKRKRRWDQTADQTPSATPKKVSSWDQADGSAETPGHTPGHTPSN
SRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSVRK
NRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSST
PLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPE
GYKVLPPPAGYVPIRTPARKLTATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKPD
DIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGP
LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYAR
VEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA
VCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIA
ALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNY
RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE
QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ
AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMT
PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC
LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLVYNDEKNPYVRYELEYFL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgaagatatcgaggcgcagatcctggagatccagggc
atgaaggcggcgctgctggaggaaggagctcagggggtcgggctcgattctaccggctac
tacgaccaggagatctacggaggaagcgacagtcgttttgctggatatgtcacctctatt
gctgccaatgagcaggaggatgacgacgaggaagactcttctaccactctgcttggccag
aagaaaccggggtatcatgccccggtggcaatactcaactccattcctcaatcagatgag
cagtatgatccttttgccgagcaccggccacagaagatctcagatcgtgaagatgagtac
aagagacgtagacaaaagatgatcatctctcctgagcgtcacgacccttttgcagacggg
ggcaaaacgccagatcccaagatgcctgccaggtcgtacatggatgtgatgaaggagcag
catctttctaaagaagagagagaaatcaggctgcagatggcagaaaaggcaaaatcaggt
gacctgaaagcagtcaatggctctgctgcgtctcaagctgctgctcccaaacgcaagcgt
cggtgggaccagactgctgaccagaccccaagcgctactcccaaaaaagtgtccagctgg
gatcaggcagatggctcagcagagacaccaggacacacacccggacacacgccttcaaac
agtcgctgggatgagacgcctggtcgtcccaagggtagtgagactcctggggccaccccc
agtacacgcatgtgggaccccacacccagccacacgcctgctggtgctgcaacgcctggc
cgagacacccctggccacgccacacccggccacggtggtgccacgtccagtgtgcgcaaa
aaccgctgggatgagacaccaaagacagaaagagagacacctggacatggtagtggctgg
gccgagactcctcgtacagacagaggggatgagtctgtgggcgagaccccaactcctggg
gcaagcaaaagaaagtcccgttgggatgagactcctgccagtcagatgggctcctccact
cctctgctcacccctggaaagacccctattggcacaccagctatgaatatggccacaccc
actccaggtcatttgatgagtatgactcctgagcagcttcaggcatggcgctgggaaaga
gagattgatgagcggaaccgtccactgactgatgaggagctggatgctatgtttccagaa
ggctacaaggtgctgccaccaccagcaggctacgtgcccatccgcacccctgcccgtaag
ttaactgccactccaacacccatcggcggcatgactggcttccacatgcaggctgaagac
cgaaccaccaaacagatgaatgaccagccatctgggaacctgcctttcctaaaaccagat
gatatccagtattttgacaaacttctggtggaggtggatgagtccactctgagcccagag
gagcagaaggagcgcaagatcatgaagctgctcctgaaaatcaaaaatggcacccctccc
atgaggaaggctgccctcaggcaaatcacagacaaggcaagggaatttggtgctgggcct
cttttcaatcagattctgcccctgcttatgtctcctacccttgaagatcaggagcgccat
ctgttggtgaaagtcattgaccgcatcttgtacaaactggacgacttggttcgaccttat
gtccacaagatccttgtggtgattgaacccttgctgattgatgaagattactatgctaga
gtagagggcagagagattatctccaacttggcaaaggctgctggtctggccactatgatc
tccacaatgaggcctgatattgacaacatggacgagtatgtgagaaacacaacagctcgt
gcctttgctgttgtggcatctgctttgggtattccctccctcctgcctttcctcaaagct
gtgtgcaagagcaagaagtcgtggcaggctcggcacacaggcattaaaattgtgcagcag
attgccattctcatgggttgtgccatcctgcctcatctgcgcagcttggtggagattatt
gaacatggtcttgtggatgagcagcagaaggtgcgaaccatcagtgctttggctattgct
gctcttgcagaggctgccacaccctatggtatcgagtcttttgactctgtgctaaagccc
ctttggaagggtatcagacaacacagaggcaagggtctggctgctttcttaaaagccatt
ggatacttgattcctcttatggatgctgagtatgccaactactacacaagggaagtgatg
cttatcctcattcgagagttccaatctccagatgaggaaatgaagaagattgtcctgaag
gtggtgaagcagtgctgtgggacagatggtgtggaggccaactacatcaaaactgagatt
ctgccccctttctttaaacacttctggcagcaccgcatggccttggacagacgtaactac
agacagttggtagacactacagtagagctggccaacaaagttggtgcagcagaaatcatc
tcaagaattgtggatgacttaaaggatgaagctgagcagtacagaaagatggtgatggag
acaatagagaagatcatgggtaatctgggtgcagcagacattgaccacaaactggaagag
cagcttattgatggcattttgtacgccttccaagaacagaccactgaggactctgtgatg
ctgaacggtttcggaacagtggtgaatgctctgggcaagcgagttaagccctacctgcct
cagatctgtggtactgttctgtggcgtctaaacaataagtcagccaaagtccgtcagcag
gctgctgacctcatttctcgcacagctgtggttatgaagacctgtcaagaggagaagctg
atgggtcatttgggtgtagtgctgtacgagtacctgggagaggaataccctgaagtgctt
ggaagcatccttggagcccttaaggctattgttaatgtgattggtatgcacaagatgacg
cctccaattaaggatttacttcctcgattgacaccaatcctgaaaaacagacatgagaag
gtgcaagaaaactgcattgatctcgtgggcagaattgctgacagaggtgcagagtatgtg
tctgcgagggagtggatgcgaatctgtttcgaactgctggagctgcttaaagctcacaag
aaggcaatccgacgagccacagtcaacactttcggctacattgctaaggcaatcggacct
catgatgtgcttgccacgctccttaacaacttgaaagtgcaggagcgtcaaaaccgagtt
tgtacaacagtagcgatagccatcgtggcagaaacatgctcacccttcaccgtactacca
gcactgatgaacgagtaccgtgtacctgaactgaatgttcagaatggtgtgcttaaatct
ctctccttcttatttgaatatattggtgaaatgggcaaggactatatctatgctgtcacg
ccattattggaggatgctctgatggacagagaccttgtgcataggcaaacagccagtgct
gtagtgcaacacatgtctctgggtgtgtatgggtttggctgtgaggactctctcaaccac
ttgctcaattatgtttggcctaatgtatttgaaacatcaccacacgttatccaagccgta
atgggagcccttgagggacttcgtgtggctattggaccatgccggatgttacagtattgc
ctgcagggtttgttccatcctgcacggaaggttcgtgatgtgtactggaagatttataat
tccatctacattggctcccaggatgcgctgattgcacattatccccttgtctacaatgat
gagaagaacccatacgtccgctatgagctggagtactttctgtga
DBGET
integrated database retrieval system
