Pangasianodon hypophthalmus (striped catfish): 113526515
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Entry
113526515 CDS
T05759
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04510
Focal adhesion
phyp04512
ECM-receptor interaction
phyp04518
Integrin signaling
phyp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113526515
04518 Integrin signaling
113526515
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113526515
09142 Cell motility
04820 Cytoskeleton in muscle cells
113526515
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
phyp04147
]
113526515
00536 Glycosaminoglycan binding proteins [BR:
phyp00536
]
113526515
Exosome [BR:
phyp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113526515
Glycosaminoglycan binding proteins [BR:
phyp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113526515
Hyaluronan
Extracellular matrix or blood plasma proteins
113526515
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
VWA_CoxE
vWA_SIBA-E
VWA_4
Motif
Other DBs
NCBI-GeneID:
113526515
NCBI-ProteinID:
XP_026769416
LinkDB
All DBs
Position
Unknown
AA seq
2478 aa
AA seq
DB search
MGKLKGLLLLFILTSCFLVSSAQNASVYTGCKANLADIVFLVDSSGSIGDADFLRMKQFL
RTFIVGLDIRPDKVRVGVAQFSGEPRKEFLLGEYADKNDLLEKVDKLTYLTGGTETGKAL
DFIQKNYFNESGGSRINQNVPQIAVVITDGESTDETKTPAMMLQSKGVLIFTIGVGAASI
RGLQSIANKPHQHFVLSFTDYENLLKATTSTVDKVCISLEAQQEALAPTYADVFVLVDSS
IEQTQKVIQFLNRLANQLNVASTSNRMALAQFGEDVSVEFRFDAYKTKNEALALIRKFRL
RGTGQRKLGKAMNYVRTNLLTTAAGSRIAQGYKQYLLVVSKGESDDNILRAVHLLKDEEV
TLVSVDFSKEQETDPQMPMAAPPKRTIYAATKNPADIAQDTKTLIETKEQIEVTGDCKSA
AVADIVFIVDVSDSITVSNFRLVRNFLHRMINGLQIDGSDSVRVGMVLYSDTPTADFYLN
TFDAKEDILQYIKLLPFMGGGSNTSKALKFAREKLFTKDTGSRRALGVQQIAVVITEGDS
LGNVTYQAAQLRRSGVQVYALGVTKDNVEQLKEIASYPPERFVFSVESFAKLNTMEKILR
KTLCNNVVRSTVDKSVRYSLKQGCIQTEEADIYFLIDHSGSINAPDFQDMKKFILEFLLL
FTIGPKQVRVGVVKFASNPTLEFGLDEYNDRASLERAVDNIQQIGGGTETGQALSSMSQR
FKEAERTRGNKVQEILIVITDGQSDDKVKDPAAQLRAQGVIIYAIGVKNANKQELLDIAA
DPKRVYFCTNFDALKPLKNEIVTDICSDKACKNMLADIIFLIDGSGSIDPNDFSKMKKFM
STIVSNSTVGKDGVHFGVVQFSSSPKVEFALNKFSDKLQMQQAVNQMQQLGGGTMTGAAL
GILSGYFDPPEGGRPGTPQILIVITDGESQDAVAQPARTLREKGITIYSIGVLNANSTQL
REISGTQDNVYLERDFDALDFLDKDLLLKICTSVDDCQKSQVADVVFLVDGSTSIGTEAF
KSMQFFMNSVVNTTQVGKDSVRFCTILYSDTPEAQFSLNRYDSKQDVRDAINNLKHPGGD
TYTAKALLYSLDYFSDSHGGRSAKGIPQMLFVITDGEATDRYYLPKPADELQKYGVSVYG
IGVANADESELLTITKDKNKVFMVQDFEALKALKQNISRVICNNTKPECRKVSADLVILI
DGSTSISDDSWKTMIHFMLSLIDNLRIKRDLFRIGVAQFSSNYRKEFYLNEYDNDVNIKK
AIEAIKQMKERTLIGAALNQVQEFFHASKGSRIQDGISQNLLLITDGASDDSVNDPADKL
RAKGIEIFVIGIGDISVPQINYIAGSPDRVYTVNNFDHLKLNRTTQEVISTICDPKDEPG
CTVDIGIGFDISQSGSSSQAIFSSQYKLWAYLPEIVRYISTLHNLCCVPQPRSLPTNIGF
RLVASNGKIWYDTRFEKYNEAIVTKVIAQMTEGLAFNTQLLHSFENKFGASGAGVKVLII
FTDGLDASVDDLMVASENLRKSGVHALIPVALEGVKSTTDLQKLEFGRGFGSNEPLMIGM
QNVGSVLQKQIDAVASRECCNVMCKCTGHEGVRGPRGSPGTKGSPGRKGHPGFPGEDGAF
GDRGPPGLNGTQGHPGCQGRRGLKGSSGHSGDTGIDGENGLDGINGEQGVTGSSGYPGEP
GNSGRQGKKGLPGIPGDPGQKGLRGDPGEPGIDNNFPGPKGEIGNPGPEGEPGPDGSPGR
PGDNGNAGLKGRRGPAGLNGAPGPPGEPGLRGSPGASGPQGPVGPIGGKGDRGIPGFPGP
HGSPGTQGNPGSRGSVGPRGQKGQPGEPGNKGADGPKGHRGPPGNDGTDGYGKQGPKGQK
GDPGFPGYPGQPGDTGDPGGKGGNGPKGQRGRAGNAGRSGTPGNPGDNGLPGPKGHKGPP
GTRAMPTCQLISYVRDNCVCCKGKAACPVYPTELVIGLDMSAEVAPALFERTRSTLLSLL
DRIEISENNCPTGTRVAVVSYSSNTKYLIRFSDYRRKKGLVEAVKNIPLERTSDRRNIGA
AMRFVGRNVFKRIRQGVLIRKVAIFLSGGQSQDVTSITTAVLEYKALDINLGVIGFRDTP
NVQRAFEADETGSFINVVERSDTQTAALEKIQRCIICFDPCNPAEGCSNSSEVSTSKEVN
MDLALLVDGSRSIQADQYEGVKQVLGTVLDQLVVSGQPSKADRQARVALYQQSTSYSGAQ
APVKQIFTFQQFQDRKLMKRSIFNNLQQTGGYSRLGDAMDFVIMEGLLTVPKPRKNKMVL
LIVGGETEYSDRARLDFISMKAKCQGVVLFTLTVGHHFSSTQVEELASFPKEQHIVHLGH
VKQGEQEYSRRFIRTFLHILSRGMNTYPGPSLRSQCESLPPDPGHTWTSTGRTPSPTLPY
PEIREDADLMISGNGDINDVCYLKKEVGPCRSYVNKWFYDQEQNKCSRFTYGGCGGNLNR
FDTRPECEARCVELLTVQ
NT seq
7437 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaactaaaaggactgctgcttctcttcattttaacatcatgttttcttgtgagc
agtgcacaaaatgcaagtgtgtatacagggtgcaaggctaatttggctgacattgtgttc
cttgtggatagctctggtagcattggtgatgcagacttcctgaggatgaaacagtttctg
cgcacattcatagtgggtcttgatattaggcctgataaagtcagagtaggagtggcacag
tttagtggtgaacctcgaaaagagttcctgttgggggagtatgcagacaagaatgacctg
ctggagaaggtagacaaactcacctacctgacaggaggcactgaaacaggaaaagctctc
gactttatccaaaaaaattacttcaatgaatcgggtggcagtcggatcaatcagaatgtg
ccacagattgctgtggtgatcacagatggtgaatccactgatgaaacgaagactccagcc
atgatgctacagagtaagggggtgttaatcttcaccattggggttggtgcagccagcatt
agaggcctgcagtccattgctaacaaaccacatcagcattttgtactgagtttcactgac
tacgagaacctgctaaaagcaaccaccagcacagtagacaaagtgtgtatttctctggag
gcccagcaagaagctctagctccaacatatgcagatgtgtttgtgttggtggacagctca
attgagcagacccaaaaggtgatacagttcctcaatcgcctagccaatcaacttaatgtg
gcgagtacatctaatcggatggctttggctcagtttggtgaagacgtttcagtggaattt
cgtttcgatgcttataaaaccaaaaatgaagcacttgcactcatccgcaaattccgactc
agaggcactgggcagcggaaacttggaaaggcgatgaattatgtgcgcactaacctcctc
accactgcagcaggcagccgaattgctcagggctataagcagtacctgctggtggtaagc
aaaggagaatcggatgacaatatacttagagcggttcatttattaaaggatgaggaagtg
actcttgtcagtgttgacttcagcaaagagcaagaaactgatccacaaatgcctatggct
gcaccgccaaaaagaaccatctatgctgcaacaaaaaatcccgcagacatagcacaagat
acgaagactctcattgaaactaaggaacagatcgaagtaactggagactgcaagtcagct
gcggtggctgatatagtgtttattgtggacgtgtcggacagcatcactgtttcaaacttc
aggctggtccgtaactttctccaccgcatgattaatggcttgcagattgatggctctgac
agtgtgcgggttggaatggtcctgtacagtgacacacccacagctgacttctacctaaac
acttttgatgccaaagaagacatcctgcagtacattaagcttttgccctttatgggtgga
ggatccaacactagcaaggcccttaagtttgcaagagagaaactcttcaccaaggacacg
ggcagccgccgtgccttaggagtgcagcagattgctgtggtcataacagagggggactcc
ttgggtaatgtcacataccaggctgctcagctaaggcgcagtggcgtccaggtctatgcc
ttaggagtcacaaaagataatgtggaacagctgaaagagattgcatcttatcctcctgag
aggtttgtgttcagtgtggagagctttgctaagcttaatacaatggaaaaaatactgagg
aagactctgtgtaacaatgttgtccgttcaacggttgacaagtctgttaggtacagttta
aagcaaggatgtatccagacagaagaagcagacatctatttcctaattgaccattctggg
agtattaatgcaccagattttcaggacatgaaaaagtttattcttgagtttctgctcctg
tttactattggaccaaaacaggtccgtgtgggtgtggtgaaatttgcaagtaaccccaca
ctagagtttggactggatgagtataatgacagagcctctcttgaaagagcggtggacaac
attcagcagataggtggaggcacagagacgggacaggctctctcttccatgagccaacgc
tttaaggaggctgaaaggactcgtggcaataaggttcaagagattctcattgtcattact
gatggacagtctgacgataaagttaaagatccagcagcacagctgagagcacagggggtg
atcatctatgccattggagtgaaaaacgcaaataagcaggagctccttgacatagcagct
gacccaaagagggtgtacttttgcaccaactttgatgcactgaaacccctcaagaatgaa
attgttactgatatatgttcagataaagcctgcaagaacatgttggcagatatcatcttt
ttgattgatggttcagggagcattgaccctaacgacttctccaagatgaagaaattcatg
agtacaatagtatccaactctacagttggcaaggatggtgtacactttggagtagtgcag
ttcagctcaagcccaaaggttgaatttgccctcaacaaattttctgacaaactccaaatg
cagcaggccgttaatcaaatgcagcagctgggcggtggcactatgactggggctgcactc
ggtattttatcaggctactttgatccaccagaaggaggtcgtcccggcactccacagatc
ctcattgtgatcacggatggcgaatctcaagatgccgttgctcagcctgcacgaaccctc
agagaaaagggcattacaatatattctataggagtacttaatgctaacagcacacaactg
cgagagatcagcggaactcaggacaatgtttatctggaaagagatttcgatgcattggac
ttcctagataaagatctcttgcttaagatctgcacttctgttgatgattgccagaaatca
caagtagcagatgttgtcttcttagtggatggttcaaccagcattggcaccgaagccttt
aagagtatgcagttcttcatgaactcagtggtgaacaccacacaggttggaaaagacagt
gtccgtttttgtactattctttactctgacacacctgaggcccaattttcccttaatcgg
tacgacagtaaacaagacgtgcgggatgctataaataatctaaagcatcctggtggggac
acatacacagccaaggcactactttactctctggactactttagtgactctcatgggggg
agaagtgcaaaaggcatcccacagatgctgtttgtcatcacggatggtgaggccacagac
cgatattatttacccaaacctgctgatgagcttcaaaaatatggagttagtgtttatggt
attggagtggccaatgcagacgaaagtgagcttctaaccattaccaaagacaaaaacaag
gttttcatggttcaggattttgaagctttgaaggccctcaaacaaaacatttccagggtg
atctgcaacaacacaaaaccagagtgtcggaaagtgtccgctgatttggtcattttgatt
gatgggtctacaagtatttcagatgactcatggaagaccatgatacattttatgctcagc
ctcattgacaatcttcgcatcaaacgtgacctctttagaatcggtgtagcccagtttagt
tcaaactacagaaaggaattttacttgaatgaatatgataatgatgtgaatataaagaag
gccattgaggccatcaaacaaatgaaagaacgtacactcattggtgctgctctgaatcaa
gtgcaagagttcttccatgccagtaaagggagccgcattcaagatggaatttcacagaac
ctgctgttgatcactgatggagcatcagacgacagcgttaatgatccagctgataaattg
agggccaagggcattgagatatttgtgattggaataggtgacatctcagtcccacagatc
aattacattgctgggtcacctgacagggtttatactgtgaataattttgaccacctcaaa
ttaaatagaacaacacaggaggtgatcagtaccatttgcgatccaaaggacgaaccgggt
tgcactgtagatattggtattggatttgatatctcccaaagtggttcaagctcacaggca
atctttagtagccaatataagctgtgggcctacctgcctgagattgtcagatacatctcc
actctgcacaacttgtgctgtgtgccccagccacgttctctgccaaccaacattggtttc
cgtttggttgctagcaatggcaaaatatggtatgacactcgttttgagaagtacaatgaa
gccatagtgacgaaggtgatagctcaaatgactgaaggactagcctttaatacccaactc
ctgcactcttttgagaataagtttggtgcctctggagctggtgtaaaggtattgatcatt
ttcactgatggcctggatgcatctgtcgatgaccttatggttgcctcagagaatctcagg
aaaagtggagtccacgcgctgattccagtagctctggaaggagtcaaaagcaccacagac
ctacagaagctagagtttggacgaggttttggctccaatgagcctcttatgattggcatg
caaaatgtgggcagtgttctgcagaagcagattgatgctgtggcttcaagagagtgctgt
aatgtgatgtgtaaatgtactggtcatgaaggggtgcgaggacctcgaggatctccaggg
acaaagggctctcctggacggaaaggacatcctggatttcctggagaagatggagcattt
ggagatagggggccgccaggtctgaatggaacccaaggacatccaggctgccaagggaga
agaggtctaaagggtagcagtggccacagtggtgacacaggaatagatggagaaaatggt
ttggatggaataaatggagaacagggtgtgactggatcatcgggatacccaggagagcca
ggcaattcaggcagacaaggcaagaagggtctcccaggaattccaggtgacccaggacaa
aaaggactgagaggagatccgggtgagccaggcattgacaacaatttccctggtcctaag
ggtgagattggaaacccaggcccagagggagagccagggccagatggaagcccaggaagg
cctggagacaatggcaatgctggtctaaagggaagacgaggccctgcaggtctaaatggt
gctccaggacctccaggagaaccaggattaagaggaagccctggagcttcagggccacag
gggccagtgggtcctattggtggtaaaggagatcgagggatacctggatttcccggacct
cacggatcaccaggcacacaaggaaatcctggctctagaggaagtgtaggacccagggga
caaaagggtcagccaggcgaacctggaaataaaggagcggatgggccaaaggggcacagg
ggccctccgggaaatgacggtacagatggatatgggaaacaaggacctaaaggacagaag
ggagatcctggttttccaggatatcctggacaaccgggtgacactggggatcctggggga
aagggagggaatggtcctaaaggccaaagaggaagagcgggaaatgcaggcaggtcagga
acaccgggtaatcctggtgataacggactacctggacctaagggccataaaggaccacca
ggaaccagagcaatgcctacttgtcaactgatcagctacgtacgagacaactgtgtctgc
tgtaaaggtaaagcagcttgccctgtctatcccactgaactggtgattggtttggatatg
tctgctgaagtggctcctgcattatttgagagaacgcgctcgactcttctttctctgctg
gacagaatcgaaatcagtgaaaacaactgtcccacagggacacgagtggctgtggtttct
tacagttctaacaccaagtacctcatccgtttttctgactatcgtcgtaaaaagggcttg
gtggaagctgtgaagaacatccctctggaacgtacatctgacagacgcaacattggtgca
gccatgcgctttgtaggtagaaatgtcttcaaacgtattcgtcagggtgttctgatcagg
aaggtggcgatcttcctatctggcggacagtcccaggacgtgacatccataaccacggct
gttctagagtacaaggctctggatataaaccttggagttattggttttagggatactcct
aatgttcagcgtgcttttgaggctgatgagacaggaagctttattaatgtggtggagaga
tcagatacccagactgcagcacttgagaagatccagcgatgtatcatctgctttgatcct
tgcaatccagctgaaggttgtagcaactccagcgaggtgtccacctcaaaggaggtaaac
atggacctggcgttgctggtggatggttcccggagcatccaggcagatcagtatgaggga
gtgaagcaggtgttgggcactgtgttggaccagcttgtagtgagtggtcagcccagcaaa
gctgacagacaggcgagggtggcactttaccagcagagtacatcatacagtggggcccag
gctccagtcaagcagatcttcactttccagcagttccaagaccgcaagctaatgaagcgg
agcatcttcaacaatctacagcagaccggcggctactccaggctgggtgatgccatggac
tttgtaatcatggagggccttctcactgttcccaagcctcgaaaaaacaagatggtgctg
cttatagttggaggagagacagaatattctgatagagcaagactggactttatctccatg
aaagcaaagtgtcagggtgtggtgcttttcactcttacagtcgggcatcatttcagcagc
actcaggtggaggagcttgccagctttcccaaagagcagcacatagttcacttgggccat
gtaaagcaaggagagcaggagtactctcggcgctttataaggactttcctacacattctg
agccggggcatgaacacctaccctggcccatcactcagaagtcaatgtgagagtcttcca
ccagatccaggtcacacctggacatccactggcaggactccttccccaacattaccttac
cctgagattagagaggatgcggacctgatgatctcaggaaacggagatataaatgatgtg
tgctacctgaaaaaagaagtagggccctgcagaagttatgttaacaaatggttctatgat
caagaacagaacaaatgctctcgtttcacttatggaggatgtggtgggaaccttaacaga
tttgacactcggcctgaatgtgaagcccgctgtgtggagcttcttactgtacagtga
DBGET
integrated database retrieval system
