KEGG   Pangasianodon hypophthalmus (striped catfish): 113528815
Entry
113528815         CDS       T05759                                 
Symbol
thoc3
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03013  Nucleocytoplasmic transport
phyp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113528815 (thoc3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    113528815 (thoc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phyp03019]
    113528815 (thoc3)
   03041 Spliceosome [BR:phyp03041]
    113528815 (thoc3)
Messenger RNA biogenesis [BR:phyp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     113528815 (thoc3)
Spliceosome [BR:phyp03041]
 Complex C
  Other components
   EJC/TREX
    113528815 (thoc3)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    113528815 (thoc3)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40_CDC20-Fz WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 WDR55 Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_IFT140_1st Beta-prop_IFT122_1st WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_Vps41 Beta-prop_WDR36-Utp21_1st eIF2A WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_TEP1_C RMC1_N NBCH_WD40 Beta-prop_HPS5 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Tricorn_2nd Beta-prop_ACSF4 B-prop_COPA_B_2nd Beta-prop_NUP159_NUP214 Beta-prop_WDR75_1st Beta-prop_SPT8 PD40 Beta-prop_EIPR1 Beta-prop_WDR41 Peptidase_S9_N Beta-prop_NWD2_C Beta-prop_Nup120_160 PROPPIN WD_LRWD1 Cytochrom_D1 Beta-prop_WDR11_1st Beta-prop_ELP1_1st DPPIV_N Beta-prop_SCAP YNCE Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 113528815
NCBI-ProteinID: XP_026773365
LinkDB
Position
Unknown
AA seq 322 aa
MASSYYHEMHENFKNNSKSREFPAHSAKVHSVAWSCDGKRLASGSFDKTASVFVLEKDRL
VKENNYRGHGDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCMATVSTKGENINICW
SPDGQTIAVGNKDDVVTFIDAKTHRPRAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL
SYPDLKLIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDVEELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEVQCESPTFTVAWHPKRPLLAYACDDK
EGKYDSNREAGTVKLFGLPNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcgtcctcctattatcatgaaatgcacgagaatttcaaaaacaacagcaaaagtcgc
gagtttccggcacacagcgctaaagttcactctgtcgcctggagctgtgatggaaaaaga
ctagcttcaggttcatttgacaaaactgcaagtgtttttgtcctggaaaaagaccgcctg
gtgaaggagaataactacagaggacatggagacagtgttgatcagctgtgctggcaccca
accaacccagatctgtttgttactgcatcaggagacaaaaccatccggatctgggacgtc
cgcactactaaatgcatggccacggtcagcacgaaaggagagaacatcaacatatgttgg
agtcctgatggtcagaccatcgctgttgggaataaggatgatgtggtgactttcattgat
gcaaagactcaccgtccacgtgctgaagagcagttcaagtttgaggtcaacgagatttcc
tggaacaatgacaatgatatgttctttctgacaaacggcaatggctgcatcaacattttg
agttatcctgacctgaagcttatccagtcaattaatgcccatccatccaactgtatctgc
atcaaatttgatcccactggaaaatattttgctactggaagtgcagatgccctggttagt
ctgtgggatgtcgaggagctggtgtgtgttcgctgtttctctaggttagactggccagtg
agaaccctgagtttcagtcatgatggaaaaatgttggcgtcagcctctgaagatcacttt
attgacattgctgaagtagagacaggggagaagctttgggaagtgcagtgcgagtctcca
accttcactgtagcctggcacccaaaaagacccctgctggcttacgcctgtgatgataag
gaaggcaaatacgacagcaatcgggaggcagggaccgtgaaactgtttggccttcctaat
gactcttaa

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