Pangasianodon hypophthalmus (striped catfish): 113528935
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Entry
113528935 CDS
T05759
Symbol
syvn1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04120
Ubiquitin mediated proteolysis
phyp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
113528935 (syvn1)
04120 Ubiquitin mediated proteolysis
113528935 (syvn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phyp04121
]
113528935 (syvn1)
Enzymes [BR:
phyp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113528935 (syvn1)
Ubiquitin system [BR:
phyp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113528935 (syvn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf_RING_Vps8_fungal
zf-ANAPC11
zf-RING-like
zf-RING_Vps41
zf-HC5HC2H
FANCL_C
zf-Nse
Motif
Other DBs
NCBI-GeneID:
113528935
NCBI-ProteinID:
XP_026773595
LinkDB
All DBs
Position
Unknown
AA seq
615 aa
AA seq
DB search
MVRAALVTATSLALTGAVVAHAYFLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWVFHFRVLSLMVLLGVLDFLFVNHACHSIITRGASVQLVFGFEYAI
LMTMVLTTFIKYTLHTIDLQSENPWENKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQASDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRASQPNTTPAPAAPAAPAAPAAPANA
PAPPAANVAPGVMPQFPPGLFPFWAPFPGAVPPAAPPAAQAASSMPQTSADATQTSGADS
GASSSNQTGTDGAAAAAAPVAGVPGFPFSMPPPFPSAPWLPMPPPPPFMSSMPPPPPSLS
TMSEEELRELEQEGRRGLEARLQCLQNIHTLLDAAMLNIHHYLTTVATLSPPRTESSTGE
ASGSGKTEASSQENGTQITGPVSGATGFSQPDSTTGVEKEEKKEEEEAEVDGEPSAAELR
RRRLRKLDTTPPVDH
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgagcagctttggttacagctactagtctggccctgactggagccgtggtggct
catgcctatttcctcaaacaccaattctacccgacagtggtatacctcaccaaaagcagt
ccgagcatggcagttttatatatccaggctttcgtgttggtttttctgctgggaaagttc
atgcgcaaggtcttctttggccagctcagagctgcagagatggagcacctgatcgagcgt
tcctggtatgcagtgacggagacctgcttagcctttacagtcttcagggacgacttttcc
ccccgttttgtggcccttttcactttgctgctcttcctcaagtgcttccattggctggct
gaagacagagtggactttatggaaagaagtccaaacatatcatgggtcttccacttcaga
gttctctctctaatggtgttgctaggagttctggacttcttatttgtcaatcacgcctgc
cacagcatcatcaccagaggagcctcagtacagctggtcttcggatttgagtatgcaatt
ctgatgaccatggttctcaccaccttcattaaatacaccctgcacactattgacctccag
agtgagaacccttgggaaaataaagctgtctacatgctttacacagagctctttacaggc
tttattaaggtgcttctgtacatggcgttcatgaccataatgatcaaagtgcacaccttc
cccctgtttgccattcgacccatgtatcttgcaatgaggcaatttaagaaggctgtaaca
gatgccataatgtctcgacgagccattcgcaatatgaacacactctacccagatgcaact
cctgaggacttgcaagcctctgacaatgtgtgtatcatctgtcgagaagagatggtaacc
ggagccaagaaactgccctgtaaccacatctttcactcaagttgccttcggtcgtggttc
cagaggcagcagacttgtcccacatgccgtatggatgttcttcgtgcgtcacagcccaac
accactcctgctcctgctgccccagcagcccctgcagctccagcagctccagctaatgct
cctgctcccccggctgctaatgttgctccaggtgtgatgccccaattccccccaggcctt
ttccctttttgggctcccttccctggtgcagttcctcctgctgctccacctgctgctcag
gcagcctccagcatgccacagaccagtgcagatgcaacccaaacttcaggggcagactca
ggggccagtagctcaaaccagactggtacagatggtgctgctgctgctgcagctcctgta
gctggagtgcctggattccccttctccatgcccccaccattcccatcagcaccatggctg
cccatgcctcctcctccacccttcatgtcatccatgcctcctccgccaccatccctgtcc
acaatgtcagaggaagaactgagggagttggagcaggaaggccgccgtggtctggaggcc
agactgcagtgccttcagaacatccacacactgctggatgctgccatgcttaacatccac
cactacctcaccaccgtcgccacactcagtcctcctcgaacagagagcagcactggtgaa
gcgagtggatcaggcaaaactgaagcttccagccaagagaatggaacacaaatcactggt
cctgtcagtggagcgacaggtttttcccaaccagactcaaccacaggagtcgagaaggag
gagaagaaggaggaagaggaggcggaggtggacggggagccgagcgctgctgaattgaga
cgtcgccgcctacgcaagctggacaccacaccgcctgtggaccactga
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