Pangasianodon hypophthalmus (striped catfish): 113529892
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Entry
113529892 CDS
T05759
Symbol
col6a3
Name
(RefSeq) collagen alpha-3(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04510
Focal adhesion
phyp04512
ECM-receptor interaction
phyp04518
Integrin signaling
phyp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113529892 (col6a3)
04518 Integrin signaling
113529892 (col6a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113529892 (col6a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113529892 (col6a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
phyp04147
]
113529892 (col6a3)
00536 Glycosaminoglycan binding proteins [BR:
phyp00536
]
113529892 (col6a3)
Exosome [BR:
phyp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113529892 (col6a3)
Glycosaminoglycan binding proteins [BR:
phyp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113529892 (col6a3)
Hyaluronan
Extracellular matrix or blood plasma proteins
113529892 (col6a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
fn3
VWA_4
Motif
Other DBs
NCBI-GeneID:
113529892
NCBI-ProteinID:
XP_026775276
LinkDB
All DBs
Position
Unknown
AA seq
2123 aa
AA seq
DB search
MPVIPTVIAESQGPKKDIIFVIDGSEGVGRDFPIIQEFVRGVVENLNVGENKIQISVVQY
GDTPHVDIYLNSHKTKEGVLNAIQELRQRGGIERNLGRAIDFVRLNVLDPVRGSRKQEGV
PQFLIVISGGKATDDVGTSVNTLKQLGTVPFSIGTRDTGLQELQVVSYVPTFAYLVEDLP
GLHTVKDQFITTLTDLSDEELKLLKPVYPIVPTISTGEKKDVVFLIDGTTMMQRDFPAIQ
DMILNIVEKLDVGLNKVRVSVVQYSEDPKLEFLLNEHSTKEEVRQSVRKIRSKGGRILNT
GQALSWVSRNIYQRSAGSRIEEGVPQFLILVTGGKSNDDVSGAASQLKLSYVAPMAVGSE
NADPEELKLISLRPEQAHTVRNFQEKPGVEQQLLATINTITSTEIEEVIKTMDIGLNIGK
KDIVFLIDGSDNVGPNGIAHIRDFILKIVQQLNVRPDQVRVAVVQYAERPKTEFSLISHG
NKKAVISSIKRLRQMGGRGGNLAEAIQYVIDNELKESAGARLDKASQHLVVLTGGKSTSD
VSLYGPILKKSQVNCIGIGAGAADSRQLREIATTPDDVFQVSTFPALPNIENQFIARLSG
TVVITTTVPPTPSGPKPKVADIVFLVDGSINLGKSNFKVTMEFIRELIDLFVTDSDNLQI
GLAHYATDVTDVFYFNTYENKDDIMNAISRTEYKGGWKINTGNAIRHIQQTHFVKERGSR
KDEGIPQILMLVTGGRSQDDGKSAALALKSAGVRIYAIGVGDIENELNDLGSESTTVARA
SNFQELSELNERILDTLVDDVMGKLCTGDKTVIKACNLDVLVGFDVAAQNIFATQKSLES
KMAAILQRITQMQAISCSSGQVPSVQMGISALDSAMEPVHLDFTESHTKLIESFRSLRNR
GPFILNGKTIDAYGARFKDRPSDRVKVVIHLTDGLDAQYNVMKERVEQMRTAGVNAFILV
ALERVPQFENAVLLEFGRGFRSKPLRVNLMDLDYELVEELDNIAEMECCSVPCKCTGQRG
YRGAVGLIGPKGSPGSQGYRGHPGDEGGPGERGPPGVNGTQGFQGCPGPRGPKGAHGYNG
EKGEIGEIGLDGINGEEGKGGVAGPPGDRGNSGQRGPKGPKGQAGDIGPTGIRGDPGITG
NDNNQRGPKGDPGDAGPPGEPGEDGRKGSAGEPGRRGIDGRRGPPGQAGPPGRPGADGLA
GEHGIGGSRGPSGPGGTPGIKGDDGNPGPRGPGGAPGPPGEKGRRGVVGRKGEPGDPGPK
GSTGPPGPRGEPGEDGRDGFGIPGPKGNKGDEGFPGYPGPKGAAGEPGTSGGPGPKGNSG
QRGAAGGVGEPGQKGEVGYPGSYGLKGPRGPDISTCALVKKIRDNCPCCYGAQECPLYPT
ELAFALDVSTGVSRNTFDSMKDIILQMVNDITITESNCPRGARVALTLYSSEVTTDIRFA
DALKKRALVERIQGLQSLRTNKKRNLETAMNFVVQNTFKRVRSGFLVRKVALFFVNDPVN
LTTEFTNAALRLNDVGITAVFLMPRQPQRFLQVNNTILAYFKDLPSPRSANYNTIIKEII
DCHICLDICTPNPLCDFKPSLISRERRASTTDLDVDMAFIIDSSESTWPSVFAEIKHYIA
HMVNQLEISVEPATSAHHARVALVQHCPYEYLYNDSSIPISMAFGLTDHKSVDDIQSFLL
DKVHQLEGSRALAAALESTVEHVFEKAPQPRQMKVLILLVTGPVEENEEKLLKAAIDVKC
KGYFIVVIGVGKKLSAGDARILAQVASEPSDVFYKTVDGPLGFYDDHLQRFAQLLPKYLS
LKNAFYMSAEVSKHCPWYQSDQPSRSQNTYKNNNEHHEQEQKEDKELKLKDVNAEDPHLV
NVTSKSFTLLWVNDDPKATHEVTVTHLRDHRIILKRNVTGPHLTLQDLEPSQTYHVAVIG
HSLKEKVTNTYKGIITTKAEDPAFVAKGEVTEVVATPPLSKPETVNELADPCSLDFDTGL
PCKDYEAKWYFDKKNGFCTQFWYGGCGGNENRFETEAQCLKHCINTVDQQPQQSVDKIKS
EDPPAPAAQFSVVDICKLPKEEGTCAKFVLKWHYDSIGKGCTRFWYGGCGGNLNRFDTQK
ECEKACGTAVAVKQAPVIAAVRT
NT seq
6372 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgatacctacagtgatagcagagtctcagggtcccaagaaggatattatcttt
gtgattgatggatctgaaggtgttgggagagattttcccatcatccaggaatttgttcgt
ggagtggtagagaacctaaatgtaggtgaaaataaaattcaaataagtgtagtgcagtat
ggagacactcctcatgtggatatctatctcaattcccacaagaccaaggagggggtctta
aatgcaatccaggaactcagacaacgtggaggtatagagcgtaacctgggtagggccata
gattttgtccgtcttaatgtcctggatccagttcgtgggagcaggaaacaggagggtgtc
ccacagtttctgatagtaatctcaggaggaaaagcaacagatgatgtaggaacatcagta
aatacactcaaacagttaggaactgtgcctttcagtatagggacaagagatactggcctt
caagagctgcaggtggtctcctatgtgcccacatttgcttacttagtggaggatttgcct
ggccttcacactgtcaaagatcaattcatcactaccctgacagatttgtctgatgaagaa
ctgaagctactgaaacctgtttatcccatagtaccaacaatatcgactggagaaaagaaa
gatgtggtcttcctcattgatggaactactatgatgcagagagatttccctgctatacaa
gacatgattctgaacattgtggagaagctagatgtcgggttaaacaaggtgagggtttca
gtagtacagtacagtgaagaccccaaactggagttcctcctcaatgagcactcaaccaag
gaagaggttcgccagtcagtgagaaaaataagaagtaaaggtggcagaatacttaatact
ggccaagcactgagctgggtctcaaggaacatctaccagcgatcagctggcagccgaatt
gaagagggtgtgccccagtttctcatcttagtgactggaggaaaatccaacgatgatgta
tctggtgctgctagccagttgaagttgagttatgtggctcctatggctgttgggtcagaa
aatgctgatcctgaggagctgaaactgatttctttaaggccagaacaggcacacaccgtt
agaaacttccaagaaaaaccaggagtggaacagcaacttttggctacaattaacaccata
acttctacagaaatcgaagaagttataaaaactatggatataggactgaatattggaaaa
aaggacattgttttccttattgatggttctgataatgttggtccaaatggaattgctcac
atccgtgactttatcttgaagattgtccaacaactcaatgtgcgccctgaccaagtgcgt
gtggctgtggtacagtatgcagagagacctaagactgagttctcacttatatcccatgga
aacaagaaggcagtcatttcatctattaagagattgcgtcagatgggtggtcgtggtgga
aacttagctgaggctattcagtatgtgattgataatgaactaaaggaatctgcaggagct
cggctggacaaggcctctcagcatttggtggtactcacaggtggaaagtctacctcagat
gtctctctttatggaccaattctcaaaaaatctcaggtgaactgtataggaattggtgct
ggcgcagcagattcaaggcagctcagagagattgcaaccacaccagatgatgtcttccaa
gtgtcaaccttcccagcactgccaaatatagagaaccaatttattgcaagactcagtgga
acagtggtgattacaaccactgtgccccccacaccttctggtccaaagccaaaggttgct
gacattgtttttttggttgacggttcaataaaccttgggaagagtaatttcaaagtgacc
atggagtttatcagagagcttattgacctctttgtcacagacagtgacaaccttcagatt
ggtctggcacactatgccacagacgtgacagatgttttctacttcaatacatatgagaac
aaggatgacattatgaatgctatcagcagaactgagtacaagggtggttggaaaattaat
acaggcaatgccattagacatattcagcaaacacactttgtgaaggagagaggtagtcgg
aaggatgagggaatccctcagatcctgatgttggtgacgggtggacgttcacaagatgat
ggtaaatcagcagcactggccctaaaaagtgcaggtgttcgtatctatgccattggtgtg
ggtgacattgagaatgagctcaatgacttgggcagtgagtccaccactgtggcccgggcc
agtaacttccaagagctttctgagctgaatgagcggattttggacacacttgtagatgat
gtcatgggaaaactctgtacaggagacaaaactgtaataaaggcttgcaacttggatgtt
cttgtgggcttcgatgtggctgctcagaacatttttgctactcagaaatcattggagtcc
aagatggctgccattctgcagcgaattacccaaatgcaggccattagctgctcttctggt
caggttccatcagtgcagatgggaatatcagcgttggactctgcaatggagcctgttcat
ctggactttaccgaaagccacaccaagctcattgagtccttcaggtctcttcgcaaccgc
ggacccttcatcttaaatggcaagactattgatgcatatggtgcaaggttcaaggaccgt
ccttcagacagagttaaggttgtaattcacctcactgatggattggatgcccaatataat
gtaatgaaagagcgagttgagcagatgcggactgcgggagtcaatgcttttatcttggtt
gctctggagagggtaccacaatttgagaatgcagtgttattggaatttggacggggtttt
aggtcaaaacctctgcgtgtgaatctgatggacttggactatgaacttgtagaggaattg
gacaatattgctgaaatggagtgctgctcagtcccatgcaagtgcactggccagagaggc
taccgaggagctgttggtcttataggaccaaagggatcacctggaagccagggctacaga
ggacatcctggtgatgaaggtggaccgggagaaagaggtcctccaggtgtgaatggaact
caaggttttcaaggatgcccaggccctagaggtccaaagggtgcacatggatacaatggt
gaaaagggagaaattggagagattggtttagacggcatcaatggggaagagggcaaaggt
ggagttgctggaccaccaggtgacagaggcaactctgggcaaaggggccctaaaggtccc
aaaggacaggcaggagatatcggcccaactggtatccgtggagatccaggcattacagga
aatgacaataaccaaagaggaccaaaaggagatccaggcgatgctgggccaccgggtgag
cctggagaagatggtaggaaaggaagtgcaggagaaccagggagacggggtattgatggt
agaagggggccacctgggcaagctggtcctcctggaaggcctggagcagatggtcttgca
ggggagcatggaattggagggtcgagaggtcccagtggaccaggtggcacaccaggaatc
aagggagacgatggtaatccaggaccaaggggccctggaggagccccaggaccacctggg
gaaaagggccgacgaggtgttgttggtcggaagggtgaacctggagacccaggacctaag
ggttctacaggaccacctggaccccgaggagaacctggagaagatgggcgagatggcttt
ggaatacctggtcctaaaggaaacaagggtgatgaaggtttccctggatatccgggtcca
aagggggcagctggtgagcctggaaccagtgggggacctggacccaaaggaaacagtggc
cagagaggtgctgcaggtggtgttggtgagcctggacagaagggagaggttggctatcct
ggatcttatggcctaaagggacccagaggaccagacatatcaacttgtgccttggtcaag
aaaatcagagataattgtccatgctgttatggagctcaagaatgtcctctgtatcccacc
gagctggcctttgccctggatgtatcgactggtgtatcaaggaatacttttgacagtatg
aaggacattatactccaaatggtgaatgacattaccatcactgagagcaactgtccacga
ggagctcgggtggccctgacactctacagcagtgaggtaaccactgacatacgttttgct
gatgccttgaaaaaacgggcattggtggaacggatacaaggcttgcagtctctgaggaca
aataagaagcgcaacttggaaacagccatgaactttgtggtccaaaacacctttaagagg
gtgcgtagtggcttcttggtacgcaaggtggctttattctttgtgaatgaccctgtgaac
ctaacaacagagttcaccaatgctgctttgcgactcaatgatgttggaatcactgctgtc
ttcctcatgcctcgtcaaccacagagattcctgcaggtaaataacactatattagcctat
ttcaaggacctaccctctccaaggagtgcaaattacaacacaattattaaggaaataatt
gactgccacatctgcctagacatctgcactcctaatccgctgtgtgattttaagccttcc
ttgatcagtagggaaagacgggcctccaccacagacttagatgttgatatggctttcatc
attgatagctctgaaagcacctggccaagtgtctttgcagaaattaaacattatattgct
catatggtgaatcagctggagatctcagtggaaccagccacaagtgcccatcatgctaga
gttgcattggttcagcattgcccatatgagtatttgtacaatgatagcagtattcctatt
agcatggcatttggcctgacagaccacaagtcagttgacgatatccagagcttcttactg
gacaaggtgcaccaactagaagggagtcgtgctctggcggcagctctggagagtacggtg
gagcatgtatttgagaaagcaccacagccacgccagatgaaggtgctcattctgcttgtg
actgggccagtggaagagaatgaagagaagctgctgaaggctgccattgatgtcaaatgc
aaaggttatttcattgtggtgataggagtgggtaagaagctcagtgctggagatgctcgt
atcctggcccaggtggctagcgaaccttcagatgtattctacaagactgtagatggacct
ctaggcttctatgatgaccaccttcagaggtttgcccaactactgcccaagtaccttagt
ttgaagaatgccttctacatgtccgctgaagtctcaaagcactgcccatggtaccaaagt
gaccaaccaagcaggtcacaaaacacttacaagaacaacaatgaacaccatgagcaggaa
cagaaggaagataaggaactaaagcttaaagatgtaaatgctgaggacccgcacctagtc
aatgttacctccaaaagtttcactttgttgtgggtaaatgatgatccaaaagcaacccat
gaggttactgtgacccacctccgggaccatcgcataatacttaagaggaacgtgactggt
ccccatcttacactccaagatctggaacccagtcaaacctatcatgttgcagtcattggt
catagtcttaaagaaaaggttaccaacacctacaaaggcataattaccacaaaagcagag
gatcctgcgtttgttgccaaaggtgaggtgacagaggtagtggcaacgccaccactgagt
aaaccagaaactgttaatgagcttgcagacccatgctcacttgactttgacactggacta
ccatgcaaagactatgaggctaagtggtactttgacaaaaagaatggattctgtacccag
ttctggtatggaggttgtggaggcaatgaaaataggtttgagactgaggcacaatgcctt
aaacactgcatcaatacagtggaccagcagccacagcagagtgttgacaagatcaaatca
gaggaccctccagctccggctgcccagttttcagtggtggacatctgtaagcttcccaaa
gaggaaggcacctgcgccaagtttgtacttaaatggcattatgactccatcggcaaggga
tgtacacgattctggtatggaggctgcggtggcaacctgaatcgttttgacacacaaaag
gagtgtgagaaagcatgtggaacagcagtcgctgttaagcaggcacctgtcattgctgca
gtgagaacataa
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