KEGG   Pangasianodon hypophthalmus (striped catfish): 113534075
Entry
113534075         CDS       T05759                                 
Symbol
tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    113534075 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:phyp03400]
    113534075 (tdp1)
DNA repair and recombination proteins [BR:phyp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     113534075 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 113534075
NCBI-ProteinID: XP_026782473
LinkDB
Position
Unknown
AA seq 595 aa
MESQHGKWTLSDSDDDDDNNVVPPTPPKDIKKPLKNIKPDLEPKARPVNALLKPRSEPRK
ENNVKLESENPSVPAMGSEARQAARLHQSNPVKYDSSPSPALKRKRETDEGGWNLSSSDE
DDDDGASSSAPKNKPKPKPPSSSPPRKKPERSRPRSPHGDNYYKEEPSDFFEASLNTMND
MYRFYLSKVTGIEKKYNTGALHIKEILSPMFGTLKESVQFNYCFDIPWMVQQYPPEFRNN
PVTIVHGEKRESKARLIQQAQPYGHIRFCQAKLDIAFGTHHTLWMSPLYPRLPEGSPETA
GESPTHFKRDLLEYLNAYRAPELAEWIERIKEHDLSETRIYLIGSTPGRFQGSDMEKWGH
LKLRKLLSEHTHPVQNAEKWPVIGQFSSIGSMGIDKTKWLSAEFQRTLMTLGKSGKTLTV
PETPLLLVYPSVNNVRTSLEGYPAGGSLPYSIQTAQKQVWLHSYFHGWKAETSGRSSAMP
HIKTYMRTSPDFSQLAWFLVTSANLSKAAWGALEKNNTQMMVRSYELGVLYLPSAFHMST
FPVEKNIFPVSGSSTGFPVPFDLPPVRYSSKDQPWIWNIPYTKAPDTHGNIWVPS
NT seq 1788 nt   +upstreamnt  +downstreamnt
atggagagccaacatggcaagtggacgctgtccgacagcgatgatgatgatgataataac
gtcgtaccaccaacaccaccgaaagacataaagaaacccttaaagaacatcaagcctgat
ctggagcccaaagccaggccagttaatgcactgttaaagcccagatctgagcccaggaaa
gaaaacaacgtgaagctcgagtcagaaaatccgtccgtccctgccatgggctctgaggct
cgacaagccgcacgcctgcatcagagcaatccggtgaaatacgacagcagtccttctcca
gcgctgaaacggaagagagaaacagacgagggaggctggaatctctccagcagtgatgaa
gacgacgatgatggagcttcttcatcagcccccaaaaacaaaccaaaacccaaaccgccg
agctcgagtcctccgaggaagaagcccgagcggagtcggccccggagcccacacggtgat
aattattataaagaggagcccagtgatttcttcgaggcgagcttaaataccatgaacgat
atgtaccgcttttatttaagcaaagtcacagggatagaaaagaagtacaacactggagct
ttgcacattaaagaaatactttcccccatgtttggcacactaaaggaatccgtccagttt
aactactgctttgacattccatggatggtgcaacaatatcctcctgagtttaggaataat
cctgtaactattgtgcacggagagaagcgagagtcgaaggctcggctcatccagcaggct
cagccctacggccatattcgcttctgtcaggccaagctggatattgccttcgggactcat
catactctgtggatgagtcctctgtacccgcggttaccagagggaagccccgagacggcc
ggcgagtctccgacgcacttcaaacgagacctgctggagtatctgaacgcgtaccgagcc
ccggagctggccgagtggatcgagcgcatcaaagaacacgacctgtcagaaaccaggatc
taccttattggttccacaccagggaggtttcagggatccgacatggagaagtggggtcac
ttaaagttgaggaagttgctgagcgaacacacacatccagtgcaaaacgcagagaagtgg
cctgtgattggtcagttctccagcatcggctctatgggcatcgataagaccaagtggctc
tcagcagagttccagcgtaccctgatgacgttagggaagagtgggaaaacgttgactgtc
ccagagacaccactcctgctggtctatccttcagtgaacaatgttcgaaccagtttagaa
ggctacccagctggaggttctttaccctacagtatacagacagcacagaagcaggtctgg
ctccattcctacttccatggatggaaagctgaaacctcaggcaggagcagtgcgatgccc
cacattaagacctacatgaggacgtctccggatttctctcagctggcctggtttctcgtt
acaagtgccaatttatccaaagctgcctggggggcgctggagaaaaacaatactcagatg
atggttcgttcctatgagctgggagttctgtacctgccttcagccttccatatgagcacg
tttccagtggagaagaacatcttccccgtctcaggctcctccacaggtttccctgtgcct
ttcgatttgccaccggttcgctactccagtaaagatcagccgtggatctggaatattcca
tacacaaaagctccagacactcacggcaatatctgggtcccgtcttga

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