Pangasianodon hypophthalmus (striped catfish): 113538930
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Entry
113538930 CDS
T05759
Symbol
sdc1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04512
ECM-receptor interaction
phyp04514
Cell adhesion molecules
phyp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113538930 (sdc1)
04514 Cell adhesion molecules
113538930 (sdc1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113538930 (sdc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113538930 (sdc1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
phyp04090
]
113538930 (sdc1)
00535 Proteoglycans [BR:
phyp00535
]
113538930 (sdc1)
Membrane trafficking [BR:
phyp04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
113538930 (sdc1)
CD molecules [BR:
phyp04090
]
Proteins
113538930 (sdc1)
Proteoglycans [BR:
phyp00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
113538930 (sdc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
Romo1
Dsc3_C
Motif
Other DBs
NCBI-GeneID:
113538930
NCBI-ProteinID:
XP_026790201
LinkDB
All DBs
Position
Unknown
AA seq
367 aa
AA seq
DB search
MRLHRGTALVVCLCLWIPVAQSYEAIPPEDQDVSGDDEFSGSGSGDDDIWIFEPEVTTQA
SPNTTKTAWFTDAPVILPERSVTQFVTLDTEPETSGHITEASLPYTTQITETQPSLVIIK
SFDSEEVQKGETTTISDVAQPETTVPPAEKLPETTVPPAEKLPVTTVPPAVLVPTQGEEY
TTTAYDEEDTTESSVIDQEDDETTVVVEVVPVTTEAPDMETTPPLLSTTSASNVADPEAS
GDAVESTTVQAIEDNSVEKDIIVEERKPNTKKTRVDGTVSENEISRSEQPGSESDFARSD
NDSLLERKEVLAGVIAGGVVGLAFAIMLVSLMVYRMKKKDEGSYSLDEHKHPNGGYQKPQ
KQEEFLA
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgaggcttcatcgtggaaccgcgcttgttgtgtgcctctgcttgtggatacctgttgct
cagtcgtatgaagctattccaccagaagatcaagatgtatcaggagatgatgagttctct
gggtcaggatcaggagatgatgatatctggatctttgagcctgaagtgacaacccaagca
agtccaaacactacaaagacagcctggttcacagatgcccctgttattcttccagaacgt
tctgttacccagtttgtcacccttgacactgagcctgaaacatctgggcacattactgaa
gcttctttgccatacaccacccagatcactgagactcaaccatctctagtcatcatcaaa
tcttttgactcagaggaagttcagaagggtgagaccacaacaatcagcgatgtggcacag
ccagagaccactgtacctccagctgagaaactaccagagaccactgtacctccagctgag
aaactaccagtgaccactgtacctccagctgttttggtgcccacgcaaggggaagaatac
acaaccacagcgtatgatgaggaggacaccacagaatcatctgtcatagaccaagaggac
gatgaaactacagttgttgttgaagtagtgcctgtgacaactgaagcacctgatatggag
accacaccaccgcttctgagcacaacatcagccagtaatgtagctgatcctgaagcttca
ggtgatgctgttgaatccactactgttcaagccattgaagataattcagttgaaaaagac
atcattgtagaggagcgtaaacccaacaccaagaaaacgagggttgatggcactgtttct
gagaatgaaatctcaagatcagagcaacccggatctgagtctgattttgctcgttctgac
aacgatagcttactggaaaggaaagaggtcctggcaggtgtcattgcaggtggcgtggtg
ggcttggctttcgccatcatgcttgtatctctcatggtctaccgcatgaagaagaaggat
gagggtagttattcactagacgagcacaaacaccccaatggaggctaccagaaaccacag
aaacaggaagaattcctggcataa
DBGET
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