Pangasianodon hypophthalmus (striped catfish): 113540158
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Entry
113540158 CDS
T05759
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04382
Cornified envelope formation
phyp04510
Focal adhesion
phyp04512
ECM-receptor interaction
phyp04518
Integrin signaling
phyp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113540158 (col4a6)
04518 Integrin signaling
113540158 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113540158 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113540158 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113540158 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
phyp04147
]
113540158 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
phyp00536
]
113540158 (col4a6)
Exosome [BR:
phyp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113540158 (col4a6)
Glycosaminoglycan binding proteins [BR:
phyp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113540158 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113540158
NCBI-ProteinID:
XP_026792239
LinkDB
All DBs
Position
Unknown
AA seq
1719 aa
AA seq
DB search
MKLWFWVFAVVLSLDSTYAGSKTDEPCAGRDCSGRCPCPLIKGSRGQPGPLGPPGPTGLD
GFIGAPGPVGPKGERGHGGHSGPSGPKGDKGPVGVPGFPGINGIPGYSGQEGPPGLPGAD
GCNGTQGDPGFPAGFPGRPGNPGPRGLPGVKGQKGEPRFISTTSVPFGPAGERGLPGPVG
PPGPIGPFGLPGYPGRPGPPGPPGPTGNPGQGYEGERGEKGDAGLPGLRGAPAALLGSPA
ISTINKGEKGDVGLPGDPGRPLVNGVVEFVGVPKGDKGTQGDIGYTGVPGLPGPQGPPGP
YGYKGEYGEKGIPGLPGVRGPPGFNGPLGEDGLKGYRGSPGLFGLGGIPGPKGYRGEPGP
PGRIFAGEQELVLQGPPGDPGYDGLPGLVGDAGLPGSPGLPGDPGSSFFQPGIPGLPGFP
GSTGPKGEKGDPGLSSFSPSGLPGDRGLPGPPGPPGPPGLTQATLFPEDLTGPPGVKGSG
GQQGQKGFKGTKGETGLCDCFGEDISGRKGPQGFQGLPGFTGLSGRKGEVGDSGPSGLRG
PQGPSGRPGERGFTGTKGEKGNTYYAVRRGQKGDIGQQGPAGPTGDTGQPGRSGAPGFPG
APGLPGDPGFGVIGDRGYPGSPGFKGRPGAAGEPGIGYPGAAGVRGFTGSPGISGLPGQP
GPPGPPGDSCGQAGLNEASFTKGGLSLPCIIPGEPGNPGFPGLPGVSGPKGQQGPPGLSG
RPGTDGSKGERGESGSGGQPGAQGFPGPRGDPGLPGTTENGFQGAPGKDGLPGFQGPIGE
PGETLGAAQGIPGLPGQRGELGDKGQPGTSGLSGGRGFDGPSGNPGVKGEGGDNGFPGLP
GQPGPRGVSPSEVSGPQGPPGNPGFPGPAGCQGFPGLKGAKGNPGRQGLGRKGSSGLPGI
PGPKGQRGRPGDTISGRNGQPGRPGIKGEKGFPGLVGFPGSPGRFGVNGQPGGKGQPGIP
GLDGIPGVNGLPGFKGDRGEQGPIGPPSTPLPLRQEKGDRGTPGATGLPGFPGPRGDKGT
PGFPGRPGFPGQQAFVDGAKGLPGDPGLQGRTGSSGFAGPKGAPGVSGFPGMTGPRGADG
VPGLFGSPGTSGLPGSKGVKGDSTGAPGTPGRRGLVGDFGYPGIPGRPGDQGSQGLPGGF
GYPGEKGLPGNPGRPGQEGLPGPHGTRGLPGFQGQRGRDGEPGFPGAPGRAGVKGLLGSP
GLDGLNGLSGPKGQPGVPGVVEGGQPGAPGLNGLKGERGSSLPGVPGFPGVKGAKGNIGY
PGQPGFPGPPGPRGGPSISPNIRGPPGDAGLPGLDGERGIPGPTGPPGPAGPGTDQGDRG
DPGFPGLPGIPGKRGEPGFAGGRGPPGNPAFKGLRGDPGVSGLTGRPGSPGDPGSYGSKG
AKGFMGTPGSKGLPGIVVPPQIQDLPSGNPGPQGAPGIAGYTGSPGQPGFPGRPGTKGKI
GPIGKPGRTGPAGPSGPIGDPGAPGYQGSAGYKGFPGRQGPPGPPGLPGRAIGIGYTLVK
HSQSSQVPMCPQGMDKLWDGYSLLYVEGQEKAHNQDLGLAGSCLPRFSTIPFLYCTTNEL
CYYASRNDKSYWLSTTAPIPMMPVANEQITQYISRCSVCEAPSQAVAVHSQDITIPPCPQ
GWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCFFFNNKHSF
WLTTVQQQRQFTQSPNSETLKGDQYRSRISRCQVCMKIL
NT seq
5160 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttggttttgggtttttgctgttgtcttgtctctggactctacatacgcaggg
tcgaagactgatgaaccatgtgcagggcgtgactgtagtggaagatgtccctgtcctctg
ataaaaggtagcaggggtcagcctgggcctttaggaccgcctggccccactggactcgat
ggctttattggggccccagggcctgtgggacctaaaggagaaagaggccatggtggtcac
tcaggaccatctggacccaaaggggacaagggtccagtgggtgttcctggttttccaggt
atcaatggtattcctggttactcaggccaggagggaccaccgggactgccaggagcagac
ggctgtaatggcacacaaggtgaccctggtttccccgccggcttccctgggagacctggc
aaccctggacctcggggattacctggtgtcaaagggcaaaaaggagaaccacggttcatt
tctacaacctcggttccttttggtcctgctggggaacgcggtcttcctggtccagttggt
cccccgggtcccatcggccccttcggtttacctggttaccctggacgtcctggtcctcca
ggtccccctgggccaacaggaaaccctggtcagggttacgaaggagagagaggagagaag
ggagatgcgggtctgccgggactcaggggtgcgccggctgctctgttaggctcgccagct
ataagcacaatcaacaaaggagagaagggagacgtgggcctgcccggtgacccaggccgc
ccactggtcaatggagttgtggagtttgttggagttccaaaaggagacaaaggaactcag
ggtgatattggctatactggtgttccaggactcccaggtccacaaggacccccaggccca
tatggctacaagggggaatatggagagaagggaattcccggattacctggtgtgaggggt
cctcctggttttaatggaccacttggagaagatggcctaaaagggtatcgtgggagccct
ggtctctttggattgggaggcattccaggccctaaaggttataggggagaaccaggacca
ccagggcgaatctttgctggtgaacaagagttagttttacaaggtcctcctggtgatcct
ggttatgatggccttccaggcctggttggagatgcaggtttaccaggatctcctggactg
ccaggtgaccctggatcatcattcttccaaccaggtattccaggccttcctggcttccct
ggttctactggacctaagggagagaagggagacccaggtctttcaagcttcagcccttct
ggtttgcctggagacagaggtttacctggacctccaggtccacctggacctccaggtcta
actcaagcaactctgtttcctgaggacctgactggaccaccaggtgtaaaaggcagcgga
ggtcaacagggacagaaaggttttaaaggaactaaaggtgaaactggactttgtgattgc
tttggtgaagacatctctggcagaaagggtcctcaaggatttcaagggctccctggtttc
actgggctcagtgggcggaaaggagaagttggtgactcaggaccttcaggactccgtgga
ccgcaggggccaagtggtcgtcctggagagcgtggctttactgggactaaaggagagaaa
ggaaacacttattatgctgttagacgaggacagaagggtgacattggccagcaagggcct
gctggtcctacaggagacactggacaacctggaagaagtggagcccctggttttcctgga
gcaccaggactaccgggagatcctggttttggggtgattggagacagaggatatcctgga
tctcctggttttaagggccgccctggtgcagccggtgagcctggcattggctacccaggc
gccgctggtgttagagggtttacaggcagccctggtatcagtgggcttccagggcagcca
ggacctccaggaccaccaggtgacagctgtgggcaggcggggcttaatgaagcctctttc
acaaagggaggactgtcactgccctgcataattccaggagaacctgggaatccaggtttc
cccggactgcctggtgtgtcaggcccgaaaggacagcagggtccaccaggactaagtgga
aggccaggtactgatgggtcgaaaggtgagagaggagaatcaggcagtggaggtcaacct
ggagcacaaggctttcctggaccaagaggagatccaggtttaccaggtactacagaaaat
ggctttcaaggtgctccgggaaaagatggccttcctgggtttcaaggaccaataggagaa
cctggcgaaactttaggggcagctcaaggaatacctggacttccaggacaaagaggagag
cttggagacaagggccaaccaggcacttctggattatcaggcggacgtggttttgatgga
cccagtggtaacccaggtgtaaagggtgagggtggtgacaatggcttcccaggacttcca
gggcagccaggtccacggggtgtgagcccttctgaagtcagtggacctcaagggccacct
ggcaatcctggatttcctggacctgcaggctgtcaaggtttcccaggactcaagggtgca
aaaggaaacccaggacgccaaggcttgggtagaaagggttcttctggactacctggaatt
ccaggaccaaaaggacaaaggggacgtcctggagatactatttcaggacgtaacggccaa
ccaggaaggccaggaataaaaggggagaagggattccctggattggtgggattccctgga
tcacctggacgttttggagtcaatggacagccagggggtaaaggtcaacctggaatccca
ggattggatggcatacctggtgtaaatggccttcctggttttaaaggggatcgtggagag
caaggcccaataggacctccctctacaccccttccactgcgtcaggagaaaggggaccgg
ggtactcctggagctactggactgcctggttttccaggaccacgaggtgataagggaacc
ccaggttttcctggtcgtccaggctttcctggtcagcaagcatttgttgatggagctaag
ggtctacctggtgatccaggtctccaagggcgcacaggttcttcaggatttgcaggacct
aaaggggcacctggtgtttctggtttccctggcatgactggacctaggggtgctgatgga
gttcctggtttgtttggatcacctggtacttcaggattgcctggtagcaaaggtgtcaaa
ggagactctactggagcacctgggacccctggaagaaggggactggtgggagattttgga
taccctggtatcccaggccgtcctggtgatcaaggttctcagggtttgccaggagggttt
ggatatcctggggagaaaggtctacctggaaatccaggaaggcctggacaagaaggtctg
cctgggccccatggcactaggggtctccctggttttcaaggacagaggggacgggatggt
gaaccaggtttccctggggctccaggtcgtgcaggagtaaaaggtttattaggatcccct
ggtttagatggactcaatggactttcagggcccaaaggtcaaccgggagtacctggtgta
gtagagggcggtcagcctggagccccgggattgaatggactaaagggagaaagaggctca
tcactgcccggagtaccaggatttcctggagtaaagggagccaaaggaaatattggttac
cctggacagccagggttcccaggtcctccaggtcctcgtgggggaccatccatttctcct
aacattcgtggtcctccaggagatgctggtttacctggacttgatggtgaaagaggtatt
cctggccccactggtcctcctggtccagctgggcctggaacagaccagggtgacagagga
gatcctggatttcctggattacctggaatccctgggaaacgtggtgaacctggatttgca
ggaggacgtgggccacctggcaacccagcattcaaaggactgagaggagaccctggagtt
agtggactaacaggacgcccaggctcccctggagatccgggaagttatggtagcaaagga
gcaaaaggatttatgggtacacctggtagcaaaggccttccaggaattgttgtcccaccc
caaatacaggacttgccatctgggaatcctggtccacaaggtgcccctggcattgccggt
tatacaggatcaccaggccagcctggtttccctggacgtccaggtactaaaggaaagatt
ggaccaataggcaaacctggtcgcaccggtccagctggaccttcaggacccattggagac
cctggagctccaggatatcaaggatctgccggttacaaaggttttcctggtaggcaggga
ccaccaggtcctccaggtttgcctggacgtgccattgggatcggctacactctggtgaag
cacagccagtccagccaggtgccgatgtgccctcagggcatggacaagttgtgggatggc
tacagcttgctttatgtagaaggacaggagaaggcacataaccaagacctgggattggct
ggctcctgtctacctcgtttcagcactattcccttcctttactgcacaaccaatgagctc
tgttattacgccagccgcaatgacaagtcctactggctgtccacaacagcacccattccc
atgatgcctgtggccaatgagcagattactcagtacatcagccgttgttcagtgtgtgaa
gccccatctcaagctgtggctgtccacagccaagacatcactattcccccctgtccacag
gggtggaggagcctgtggattggttactccttccttatgcacacagctgcgggggctgag
ggaggtggccagtccctggtttctcctggctcatgtttagaagacttccgtgcaacacct
tttattgaatgcaacggggctcggggcacctgtttcttcttcaacaacaaacatagcttc
tggctaaccactgtgcaacagcagaggcagtttacacaaagtcctaattcagagaccctg
aagggagatcagtaccgtagccgcatcagccgctgccaggtctgcatgaagatcttgtag
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