Pangasianodon hypophthalmus (striped catfish): 113546640
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Entry
113546640 CDS
T05759
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
113546640
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
phyp04040
]
113546640
Ion channels [BR:
phyp04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
113546640
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
113546640
NCBI-ProteinID:
XP_026802394
LinkDB
All DBs
Position
Unknown
AA seq
1536 aa
AA seq
DB search
MRKLDVILFLPSCEFFLETSHIVYQDVEMDEGFIGAFPVSDQHVQSGVLNWLSNSFVSAL
PQPTGSPNLHRANISEAKSPQDEDSDRSGVIGWISGGIGKVVPQPETKYAEKSEKPEEED
TEVYDIEELPDAEPLPNVPVVEMVSEDEVSEVQHSSQFPPGMVQWIKTGFQNALPYHMPR
PPDHQANGSQRSSRCSDKVFSPPPESVTSLTEVDTKVNMMGWIVHGLGLALPQPVIRSKE
DYGGVAEKVAQHAVHSRPTSTDLVLEEVDSDDDQDQNQNQENRSSSPKQAEPEERSDPEA
TSPSAPASCLKQEDAETQTGRWTPFIESIKREAEDSAMATMEERLREERLEMARMAEEVA
RHAAEVTVRELAGARVTVHTPILEEEEEAEPELQELQDEEKEAEILHSESTECQELSPVE
KFIQEIEEPAEGPEETEEEVEDADSPGVEEPNLPSPEPKILTADQPVSPEPFRPEPVPAE
EPEEPEEEESGSSSEAESEPDPVTQQPKSCDGASVKQNVTQDEGTLAEEETCVPSRCDAL
KACLMRVPCAPVCLNRFNQLLNENNITLPQVPPIPKLPSRLSQITQQFPPLPTRLNQLHQ
QITHFPQQISQRVPKLPEHFPSFSWKLPTFPERFSCRFPHGLPKRPQNLPDFSQHFSNFP
QHLSNIPHHLSNLPQHLSSVPRQWYTTVQNRLSNIQPQQQSRDLELDRLVRQSPLHISRT
PSPSSPSSILDLPNVPFYPRLPPISPSRQLSGLSNPIFNAEDELNSARPSASSRLSIHPA
VNVEDIDSENEQCGRTSHHMPQIITPQDPNLKTLTVPGPSKSSRTRKKLYSSGDEEDEEL
ETQVRAWPSQSSITSADDALKERPSSAASQASTMVNERLQELVKLFKERTERAKEKLIDP
DDLDEDTPPATPAAPPPEPPKGPAPVEEGQAAPTAEEEVEKEEYTKLLCFKVKPQSRIRR
LLQYRFPASIDPFTNLGYVLWLFFVTLAWNWNVWMIPVRWAFLCDVNGSLYAWLIADYLC
DAIYILDILLFQPRLQFIRGGDIISDKKEMRANYMKDLRFKLDVVSLLPLELFYLLDGVK
PLLRCPRILKILSFFEFNARLEAILTKAYVYRVIRTTSYLLYSIHVNACLYYWMSSVRGL
GATTWVYNGEGNAYIRCFYFAVKTLITIGGLPEPTALEEYIFQLINYFIGVFAFSIMIGQ
MRDVVGAATADQTHYRSCMDSTVKYMGSNRIPKDVQNRVKTWYNYTWQSQGMLNEEELLV
QLPDKMRLDIAVDVNYSIVSKVPLFEGCDRQMIYDMLKRLRSVVYLPGDYVCKKGEVGRE
MYIIKSGAVQVVGGPDGKTIFVTLKAGSVFGEISLLAVGGGNRRTANVIAHGFANLFILE
KKGLNEILVHYPESQKLLRKKAKKMLADKKPEKKKEEEKEPVRVIPARTETPKLLKAALE
MTEKTGLRGTMAKLKRKKNNKSCVSLQPSVCSSVLPGSPIERQHSEREADVLSQISDSSV
QGPPISPSGHKEESRSVREGPALNQRMIVGKDKTDE
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagcttgacgtcattctatttctgccttcttgtgaatttttcctggagacgagc
cacatagtatatcaggatgtggagatggatgagggcttcataggggctttccctgtatct
gatcagcatgttcagagtggcgtgctgaactggctgtctaatagtttcgtgagtgccctg
ccacagcctaccggaagcccgaacctccacagagccaacatctccgaggccaagtcacct
caagatgaggattcagacagatcaggagtcattggctggatctcagggggaattgggaag
gtcgtaccgcagccagagaccaaatacgcagagaagagtgagaaacctgaagaagaagat
acagaggtttacgatattgaagaacttccagatgcagagcctcttcctaatgttccagtg
gtggagatggtctcggaggacgaggtgtctgaagtgcagcattcttctcagttccctccc
ggaatggtgcagtggataaagactggtttccagaacgcactgccgtaccacatgccccgc
ccaccagaccaccaagcaaatggctcccaaagatcatcacgctgctcagataaagtgttc
tcacctcctcctgaatcagtaaccagcctgacagaggttgacacaaaagtcaacatgatg
gggtggattgttcacggtctcggcctggccttgccccagcctgttataaggagcaaggag
gattatgggggggtggcagaaaaggttgcgcaacacgctgtccactccaggccaacttcc
acagacctggtcctcgaggaagttgactcagatgatgaccaggaccagaaccagaaccag
gagaacagatcatcttccccaaaacaagcagagccagaggagcggtcagatccagaagcc
acaagtccctcagcaccagcgtcatgcctgaagcaggaagacgctgagacacaaaccgga
cgatggacacccttcatcgagagcatcaagagagaggcggaggacagcgccatggcaact
atggaggaacgattgcgtgaggagcgtttggagatggcgaggatggccgaggaggtggcg
agacacgcagcggaggtgactgtcagagagctggctggagcccgagtgaccgtacacaca
cccattctggaggaggaggaagaggccgagccagagttacaggagctgcaggatgaggag
aaagaagcagaaattttacacagtgaaagcacagagtgtcaggaactatctccagttgag
aagttcatccaggagattgaagagccagcagaaggtccagaagagacagaggaagaagta
gaggatgcagattcgcctggtgtagaagagccaaaccttccttctcctgagccgaagatt
ttgacagcagatcaacctgtttctcctgaaccttttagaccagaacctgttccagctgaa
gagccagaggaaccagaagaagaggagtctggtagctcatcagaggctgaatcagagcca
gatccagtcactcagcagccaaagtcgtgtgacggagccagcgtgaagcagaacgtcacc
caggatgaaggcacattagctgaggaggaaacttgtgttccctccagatgtgacgcgttg
aaggcctgccttatgcgcgttccctgcgctccagtgtgcctcaaccgcttcaaccagctg
ctgaatgagaacaatatcaccctgccccaagtgccccccatacctaaactgccctctcga
ctatcccagatcacccagcagttccccccattgccaaccagactcaaccagctacatcaa
caaatcactcattttccccagcagatttcccagcgtgtacccaagcttcctgagcacttc
ccttccttctcctggaaacttcctactttccctgaaagattttcctgcaggtttccccac
ggacttcccaaacgtccacagaatctgcctgatttttcacaacacttctccaacttccct
cagcacttatccaatattccacatcatctatccaatcttcctcagcacttgtccagcgtt
cctcggcagtggtacacaactgttcagaatcgtctgagcaacatccagccgcagcagcag
agtcgggacctggagctggaccgtctggtccgccagtcccccctccacatctcccgtacc
ccgtccccttcctcgcccagctccattctggacttgcccaatgtgcccttctatccccgt
ctgccccccatcagcccatcacgccaactctcaggcctctccaaccccatctttaatgcc
gaggatgaactcaactctgctagaccttcagctagctccagattgagcattcacccagca
gtaaatgtggaagatatagactcagaaaatgagcagtgtgggagaacttcccaccacatg
ccccagatcatcaccccacaagaccccaacctcaaaaccctcaccgtgcctggaccatcc
aaatcgagcagaaccagaaagaagctgtactcttcaggagatgaggaagatgaggagctg
gagacgcaagtcagggcctggccgagccaaagcagcatcacgagtgctgatgacgcgctg
aaggagcgtccgtcatcagccgcaagccaggccagcacgatggtgaacgagcgtctgcaa
gagctggtcaaactgtttaaagagaggacagaacgcgccaaggagaaactcatcgatcct
gacgacttggacgaggacacaccacctgccactcctgcagcgcctcctcctgagcctccg
aagggaccagcacctgttgaggagggtcaggccgctcctactgcggaggaggaagttgaa
aaggaagagtataccaagctactgtgcttcaaggtgaagcctcagtccaggatcaggcgc
ctgcttcagtaccgcttcccagccagcatcgacccgttcaccaatctgggctacgtcctg
tggctcttttttgtcactttggcctggaactggaacgtgtggatgatcccagtgcgctgg
gctttcctctgtgatgtcaacggctccctttacgcatggctgatagctgactacctgtgc
gacgccatctatatcctggacatcctgctgttccagccacgcctgcagttcatccgcggc
ggcgatattattagcgacaagaaggaaatgagagccaattacatgaaagatctgcgattt
aagctggatgtggtcagtcttcttcccctggagctcttctatctcctagatggggtcaaa
cctctcctccgctgcccacggatactgaagatcttgtctttctttgagtttaacgcgcga
ctggaggccattttgaccaaagcctatgtctacagagtcattcgtaccaccagctacctc
ctgtactccatccatgttaatgcctgtctctattactggatgtcgtccgtacgaggcctc
ggagctaccacctgggtatacaacggagagggcaatgcatacatccggtgtttctacttt
gctgtaaagactctgatcactatcggtggactgccggaaccgaccgcactcgaagagtat
atttttcagctcatcaactactttatcggcgtattcgccttctccatcatgattggacag
atgagagacgtggtgggcgctgcgacagctgatcagacacactaccgctcttgcatggac
agcacagtgaagtacatgggctctaaccgcatccccaaagacgtgcagaaccgggtgaag
acctggtacaactacacgtggcagtctcagggcatgctgaacgaagaggaattgcttgtg
cagttgcctgacaagatgaggcttgatatagcagtggatgtgaattactcaattgtcagc
aaagtgccactgtttgagggctgtgacaggcagatgatctatgacatgctgaaaaggctc
agatcagtcgtgtaccttcccggagactacgtctgcaaaaagggtgaagtaggtcgagag
atgtacatcataaagtcaggagcggttcaggtggttggcggaccagacggaaaaactata
tttgtgacgctgaaagcaggatctgtgtttggtgaaatcagcttgttagcggtgggaggt
ggaaaccggcgaactgccaacgtcatagcgcacggctttgctaatctcttcatcttggaa
aagaagggcctcaacgaaatccttgtgcactatcctgagtcccagaaactgctgcgcaag
aaagcaaagaagatgctggcagataagaagccggagaaaaagaaagaggaggagaaggag
ccagtgcgggtgattcctgcgcggacagaaacccctaaactgttaaaggccgcgctggaa
atgactgagaaaacgggcctgcgaggcacaatggccaagctgaagagaaaaaagaataac
aagtcctgtgtttcattgcagccatctgtctgttcctcagtgctacctggctctccgatc
gagaggcagcactcggagcgagaggccgatgttctctcgcagatctcggacagcagtgta
caaggacctcccatcagcccctccggccacaaagaggagagccgctcagtgcgggaagga
ccagcgctaaaccagagaatgatagtggggaaggacaagacggatgagtaa
DBGET
integrated database retrieval system
