Paenibacillus sp. IHBB 10380: UB51_19610
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Entry
UB51_19610 CDS
T03836
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pih
Paenibacillus sp. IHBB 10380
Pathway
pih03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pih00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UB51_19610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pih03021
]
UB51_19610
03400 DNA repair and recombination proteins [BR:
pih03400
]
UB51_19610
Enzymes [BR:
pih01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UB51_19610
Transcription machinery [BR:
pih03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UB51_19610
DNA repair and recombination proteins [BR:
pih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UB51_19610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AJS60286
LinkDB
All DBs
Position
complement(4293544..4297089)
Genome browser
AA seq
1181 aa
AA seq
DB search
MAGHLVQYGRRTRRSYARINEVLEIPNLIEIQQKSYDWFLEEGLREMFHDISPIQDFTGN
LVLEFIDYSLSEPKYTIDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTD
TGTFIINGAERVIVSQLVRSPSVYFSTKIDKNGKKNYTATVIPNRGAWLELETDAKDIMY
VRIDRTRKIPVTVLLRSLGFGTDAEILDLLGNDEYIRNTLDKDNTDSTEKALIEIYERLR
PGEPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAQSLVDPATGE
ILAESGQMVDRRLLDELMPHLENGVGLKTYHVANGALDADDIPLQSIEVFSPIEEGKVIK
VIANANIDKSVKNITPADIISSISYFIDLLHGVGNTDDIDHLGNRRLRSVGELLQNQFRI
GLSRMERVVRERMSIQDANVITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLGELTH
KRRLSALGPGGLTRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLINSLSTFARVNEYGF
IEAPYRWVDSKTGIVTEQIDYLTADEEDNYIVAQANAKLTADSKFEDDIVIVRYNKQADN
ILSMPSDRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVG
TGMEHKSAKDSGVCIVSKHNGVVERSSANEIWVRRIELVDGKEVKGDVVKHKLHKFMRSN
QGTCINQRPIVNIGDTVKIGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLSE
KMVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEISAG
DILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKVFTRENGD
ELPPGVNQMVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVQVVLNP
LGVPSRMNIGQVLEVHLGMAAMRLGIHVATPVFDGADENDVFDTMEESGMQRNGKTRLYD
GRTGDLFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLG
LDVKILSGDEQEIEMKELDDEDEAAGDKLSLNIEGAEVGVE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatcttgttcagtatggtcgacgcactcgacggagttatgcaagaattaac
gaagtactcgaaattccgaatctgatcgaaatccaacaaaaatcatatgattggtttttg
gaggaaggattgcgcgaaatgtttcatgatatttccccaattcaggatttcacgggtaat
ttggtgctggagtttatagactacagccttagtgagcctaaatatacgatagacgacgcc
aaagagcgtgacgtaacgtatgcagctccacttagggttaaggtgagactcatcaacaaa
gaaacaggtgaagtcaaggagcaggaagtgttcatgggagacttcccgttgatgacggat
actggtacgttcattatcaacggtgcagaacgggtaattgtcagccagttggttcgctct
cctagcgtctatttcagtacgaaaatcgacaaaaacggtaaaaagaattatacagcaact
gttattcctaaccgtggcgcatggcttgaactggagacggatgctaaggatatcatgtat
gtccggattgaccgtacccgtaaaataccggtgactgtgttacttcgttcccttggtttt
ggcactgatgctgaaatcttggatttgcttggtaatgatgagtacatccgtaatacgttg
gacaaagacaatacggattcaacggaaaaagcgcttatagagatctatgaacgccttcgt
ccaggtgaaccacctacattagacaatgcgaagagtctattggtagcacgtttctttgat
cctaagcgttatgatcttgctaacgtaggtcgttacaagatcaacaaaaaattacacatt
aagaatcgcttgttcaatcaacggttagctcaatcactagttgatccagctacaggagaa
attctggctgaatcaggacaaatggtagatcgtcgtttactagatgagttgatgcctcat
ttggagaatggtgttggactcaaaacatatcatgtagcgaatggtgcgcttgatgccgat
gatattccactacagagtattgaagtcttttctcctattgaagaaggcaaagttatcaaa
gtgattgcaaatgcgaacattgataaatcagttaaaaatattacaccggctgatattatt
tcatccatcagctatttcatagacctcctacatggcgtaggaaacacagatgatattgac
cacttgggtaaccgtcgcttgcgttctgttggtgaattgcttcaaaaccaattccgcatc
ggtctttctagaatggaacgtgtagttcgtgaaagaatgtccatccaagatgcgaatgtg
atcacgccacaagcattgattaacattcgtccggttatagcatccattaaagaattcttc
ggaagttctcaattgtcgcaatttatggatcaaacgaacccactgggtgaattgacgcat
aaacgtcgtctatctgctctgggacctggtggtcttacacgtgagcgcgctggtttcgaa
gttcgtgacgtccatccaagtcattatggccggatgtgtccaatcgagacaccggaaggt
ccgaacattggtttgattaactccttgtcaacctttgctcgtgtgaacgaatacggcttt
attgaagctccgtatcgttgggttgattctaagactgggattgttaccgaacagattgat
tatttgactgcagacgaagaagataactacattgttgctcaagcgaacgctaagctaaca
gctgacagtaagtttgaagatgatatcgttatcgttcgttacaataagcaagcagataac
attctatctatgccaagtgatcgtgtagattacatggacgtttctccaaaacaagtagtg
tcggtcgcgactgctttgattccattcctagagaatgatgactccaaccgcgccctgatg
ggatccaacatgcaacgccaagcggtgcctctattgattcctaaggccccactggttggt
acagggatggaacacaagtctgctaaagactctggtgtatgtattgtatccaaacataac
ggtgttgttgaacgttcttctgctaatgaaatctgggttcgccgtattgaacttgtagat
ggcaaagaagtgaagggtgacgtcgttaaacataaattacacaaatttatgcgttcgaat
caggggacttgtattaaccaacgtccaatcgtcaatataggcgacactgtgaagattggg
gatatcctagcagatggaccttcaactgagatgggcgaactcgctcttggacgtaacgtt
gtcgttgctttcatgacttgggaaggttacaactatgaggatgctatccttctaagtgag
aagatggtcaaggaagatgtatacacttcaattcatattgaagaatatgagtcggaagct
cgtgacacgaagctaggacctgaagagattactcgcgacattcctaatgttggtgaagat
gcacttcggaacttagatgaacgaggtattattcgtatcggtgctgagattagtgctggt
gacatcctagttggtaaagttactccgaagggtgtaacagaattgactgctgaagagcgc
cttctacacgctatatttggtgagaaagctcgtgaagttcgtgatacatcattacgtgtt
ccgcatggtagtgacggtattatcgtagatgtgaaggtgtttactcgtgagaacggtgat
gaactacctcctggtgttaatcaaatggtgcgtgtctacattgcgcagaaacgtaaaatc
tccgaaggtgacaaaatggcgggacgccacggtaacaagggtgtcgttgctcgtatttta
cctgaagaagatatgcctttccttccagatggaacgccggtacaggttgtattgaatcca
ctaggggtaccttctcggatgaatatcggtcaagtacttgaggttcacttgggtatggcc
gctatgcgactaggaattcacgtagcaacgccggtatttgacggtgcggacgagaatgac
gtattcgatacgatggaagagtctggcatgcagcgtaatggtaagactagattgtacgat
ggtcgtacgggcgatttgttcgaacgcgaagttacagtcggcgttatgcacatgattaag
ctggctcacatggttgatgataagatccatgctcgttctacaggtccttactcactcgtt
acacaacaaccgttgggtggtaaagctcaattcggtggtcaacgtttcggggaaatggaa
gtatgggcattagaggcttacggtgctgcttatacactacaagaaatcttaacagttaag
tccgatgatgtagtaggtcgggtgaaaacgtacgaatctatcgtcaagggcgagaatgtt
ccagaacctggtgttccagaatcgttcaaggttcttattaaagaacttcaatctttaggt
ttggatgttaagatcttgagtggtgacgaacaagaaatcgagatgaaagaactcgatgac
gaagacgaggcagcgggcgataagctgagtctcaatatagaaggcgcggaagtcggagtg
gaataa
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