Paenibacillus sp. IHBB 10380: UB51_21335
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Entry
UB51_21335 CDS
T03836
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pih
Paenibacillus sp. IHBB 10380
Pathway
pih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UB51_21335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pih03019
]
UB51_21335
03009 Ribosome biogenesis [BR:
pih03009
]
UB51_21335
Enzymes [BR:
pih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UB51_21335
Messenger RNA biogenesis [BR:
pih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UB51_21335
Ribosome biogenesis [BR:
pih03009
]
Prokaryotic type
rRNA helicases
UB51_21335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AJS60572
LinkDB
All DBs
Position
complement(4701773..4703218)
Genome browser
AA seq
481 aa
AA seq
DB search
MSTQHFKDYTLSEDIVRALDSLGYKHPTEVQREVIPMALDKRDLVVKSQTGSGKTASFGI
PICDMVDWKENKPQALILTPTRELAAQVKEDITNIGRFKRIKATALYGKQPYAPQTAELK
QKSHVVVGTPGRVLDHIERGTLALECLEYLVIDEADEMLSMGFIQQVESIIQKLPRKRVT
MVFSATLPKDIEKLCYKYMTNPTQIEIKATGITTATIEHSLFEVREGDKFSLLKDITIVE
NPDSCIIFCRTQEHVNQVCEQLTNADYTCSKIHGGMLQEDRFEVMNDFKRGQFRYLVATD
VAARGIDIDNITHVINYDLPLEKESYVHRTGRTGRAGKTGKAITFITPFEDKFLNEIEGY
IGFNIPKGSVPSREEVTSKKAAFEGKIGIEPTLKQDKNEQLNKEIMKLYFNGGKKKKIRA
VDFVGTIAKIEGVTADDIGIITIQDNVSYVEILNGKGPHVIDVMKNTTIKGKLLKVHKAN
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtactcaacatttcaaagactatacattaagtgaagacatcgtaagagcgcttgat
agtttggggtataagcatccaactgaggttcaacgtgaagtcataccgatggcgctggac
aagagagatcttgtcgtgaaatcgcaaacaggaagtggaaagacggcatccttcggtatt
ccgatctgtgacatggttgattggaaagaaaataagccacaggcgttaattctaaccccg
actcgtgagcttgccgcacaagtgaaagaagatattacgaacattgggcgattcaaacga
atcaaagcgacagcactatatggcaagcagccctatgctccgcaaaccgcagaattgaag
caaaaaagccacgtcgtggtaggtacacctggacgagttctagatcatattgagagaggg
acgcttgcattagagtgccttgaatatcttgtgatcgatgaagcagatgagatgttaagt
atgggatttattcagcaagtggagtctattattcagaagctacctagaaaacgggttacg
atggtattctcagctacgttgcctaaggatatagagaagctctgttataaatatatgact
aatcccactcaaattgagatcaaagctacgggaattacgacagcgaccatcgagcattcg
ttatttgaagtaagagaaggggacaaattctctctgctgaaggacattacgatcgttgag
aatccagatagctgtattattttctgtcgtacacaagaacatgtaaatcaggtgtgcgag
caattaacgaatgcagactatacctgttccaagatccatgggggtatgctgcaagaagat
cgatttgaagtgatgaatgatttcaaaagagggcaattccgttacttagtggccacagat
gttgctgcaagagggattgatatcgataatatcacgcatgtgattaattatgatttaccg
cttgagaaagagagctatgtgcatcgtacgggaagaacaggacgcgcaggtaagacgggg
aaagcgatcacgttcataaccccttttgaagataaattcctgaatgaaattgaaggatac
attggctttaacattcctaaaggaagtgttccttctagagaagaagtgacaagtaagaag
gccgcttttgaagggaaaattgggattgaacctacgcttaaacaggataagaatgaacaa
ttaaacaaagaaattatgaagctctactttaatggtggtaagaaaaagaaaattagagct
gtagatttcgtgggaaccattgcgaaaattgagggcgtaactgctgatgacattggtatt
attacgattcaagataacgtatcctatgtggagatattgaatggtaaaggtcctcacgtc
attgatgttatgaagaatacgacgatcaagggtaagctattgaaagttcataaagctaat
aaataa
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