Pirellula sp. SH-Sr6A: VN12_16750
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Entry
VN12_16750 CDS
T04360
Name
(GenBank) hypothetical protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir00040
Pentose and glucuronate interconversions
pir01100
Metabolic pathways
pir02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
VN12_16750
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
VN12_16750
Enzymes [BR:
pir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
VN12_16750
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NCBI-ProteinID:
AMV33779
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Position
4180185..4181591
Genome browser
AA seq
468 aa
AA seq
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MLVRDAFRISFVFGLASFFALGTEANGGAEIAVVAFPGAEGWGAVSRGGREGKVIAVTNL
DASGPGSLAEACRTEGPRIVVFQVSGVIRGDIRITHPNITIAGQTAPGAGITIEGVVSSY
DHGVHDVILRHLRVRPRRATGAGGDCIQLGGQGPRKTGTYNIMLDHLSLSWGNDEMIDLY
HAHHISVQWCTIEQSDNQGHDKGEHNYGVISAAEDSGAVSIHHNLWAHHARRVPCMAPYR
KDAAGDFCNNVIYNCRGGYTDDGHGDRAKSAVNLHKNYYCRGPQTKDRIYPFALSPKMNY
FVHENYFEDWGVQGHPKYWKWGTQPGSAPKWLQFNNNGGELDVPAATPPIQLVRPKDAYE
LVLRKAGCWPRDHVTQQTIEEVRSQTGSWGRSAPPAPSDDWFLQGLEKAAPPQDSDQDGM
PDAWELQHRLNPMDPLDGQRVVSHGESDDDRHAGYTFVEFYLNELADR
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgcttgtccgcgatgcatttcgaatttcgtttgtttttgggctggcatcgtttttcgca
ctcggcaccgaagcgaatggcggggcggaaatagctgtcgtcgcgtttcccggcgcagag
ggatggggagccgttagtcgaggtgggagagaaggcaaagtgatcgccgttacgaatctc
gacgcttcggggcccggaagcctggccgaagcttgtcgcacggagggacctcgcatcgtt
gtcttccaagtgagcggagttattcgaggcgacattcggatcacccaccccaatatcacg
atcgcaggacagactgccccgggagccgggatcacgattgaaggagttgtctccagctat
gaccacggggtgcacgacgtgattttgagacacctgcgggtgcgtcctcgccgcgcaaca
ggagccggcggcgattgcatccaactagggggccagggcccacgaaaaactggcacttac
aacatcatgctcgaccatctatcgctcagttggggaaacgacgagatgatcgacctctat
catgcgcaccatatctccgtccaatggtgcaccatagaacagtcggataaccaagggcat
gataaaggagaacacaactacggagttatttccgcagcggaggatagcggcgccgtttcc
attcaccacaatttgtgggcgcatcatgctcgaagggtcccctgtatggcaccttaccgc
aaagatgctgcaggcgatttttgcaacaacgtgatctacaactgcaggggtggctacacc
gacgatggtcacggcgatcgcgcgaaaagtgctgtcaaccttcacaaaaactactattgt
cgggggcctcaaacgaaggataggatctatccctttgctttatcacccaagatgaactat
ttcgtccacgagaactacttcgaagattggggcgtccaagggcatcccaagtattggaaa
tggggaactcagccgggtagcgcgccgaaatggttgcagttcaacaacaacggaggtgag
ttggatgttccggctgctacgcccccgatccagcttgtgagaccgaaggatgcctacgag
ttggtactccgcaaagcaggctgctggcctcgagatcacgtgacccaacaaactattgaa
gaggtccgatctcagactggcagctggggacgcagcgctcccccggcaccgagcgacgat
tggttcctacaaggtctcgagaaggctgctcctccccaggattccgatcaagatggaatg
cccgacgcttgggaacttcagcatcggctgaatcctatggacccgctcgatggccaacga
gtcgtctctcacggggaatcggatgacgaccgccacgctggctacacctttgtagagttc
tacctcaacgagttagcagatcgatga
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