Pyrobaculum islandicum: Pisl_0390
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Entry
Pisl_0390 CDS
T00444
Name
(GenBank) DEAD_2 domain protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pis
Pyrobaculum islandicum
Pathway
pis03022
Basal transcription factors
pis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pis00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Pisl_0390
09124 Replication and repair
03420 Nucleotide excision repair
Pisl_0390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pis03021
]
Pisl_0390
03400 DNA repair and recombination proteins [BR:
pis03400
]
Pisl_0390
Enzymes [BR:
pis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Pisl_0390
Transcription machinery [BR:
pis03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Pisl_0390
DNA repair and recombination proteins [BR:
pis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Pisl_0390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABL87568
UniProt:
A1RRI6
LinkDB
All DBs
Position
375283..377025
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AA seq
580 aa
AA seq
DB search
MELFPYEEFRPYQREIYEKTYTTLLTGGTLLINAPTGLGKTAAVISAAAKYILETGGVVH
YTVRTRTELEPPVRELANIMRRGVELDYVVIKSRQDMCCYQQLKKLDYLEFLAECNLLKS
MDKCVYYPPRDVSIPLKNVSAYIKFLCTAYSCPYEYAKARLNRAKLIISTYYYILGREHI
DLKDRAVIIDEAHSIFDAVIHLYTVKVSETDVKSAYREAKKYGFLEEASKIYALLTFIRK
MSGVVDLGDLLGIVEDLDLENAIWEIIKKKTDEKINPYTPLILLRELKNALKSRIKYFSE
IRGEDATKVLVLQPLDPTSLVKEKLKEAKSVIYISGTLPISLFSTTLGLIKYSHIDISFS
EYIPRQNYLSIVDLGVTTKFTERSEDMYVKIAQRIADIINISPGGVLAVFPSYEVLKGVR
KYLSISIPHWYEGSQEVDLHNLPDRFFIGAVARGRYAEGVEYVRDGKNLLSTVAVVGVPY
PEPSPYLEKRVESLRPRLGEKAWNSVYLYYAIIAVRQAIGRLFRGPGDRGVLIFLDRRYA
EPDIWSSLSDILSGSLIVNELGEAKENIIHFFTSVLKVAK
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
gtggagctttttccatatgaggaatttaggccttaccaacgtgagatctatgagaaaaca
tacactaccttacttactggggggactcttttaattaatgcacctacaggtcttggcaaa
acagccgcagttataagcgccgcggcgaaatatatcttagaaaccggcggcgtagtacac
tatacagttagaacaaggacagagctagagccccccgtgagagagttggcaaatataatg
aggcggggagtggagttagactatgtagttatcaagagtagacaagacatgtgttgttac
caacaactgaagaagctcgactacttagagtttctggcagagtgtaatctcctcaaaagt
atggacaaatgtgtatactatccgccaagagatgtaagcattcccttaaaaaacgtctcg
gcctacataaagtttctctgtactgcatatagttgtccttatgaatatgcaaaagctagg
ctaaatcgtgcaaaactcataatttctacctattactatatactgggacgagaacatata
gatctaaaagatagagctgtaataatagatgaggcacactctatatttgatgcagtaata
catttatatacagttaaagtatcggaaacagatgttaaatccgcatatagagaggcgaaa
aaatacggctttttagaagaagctagcaaaatatatgccttactcacatttattagaaaa
atgtcgggcgttgtagatttaggagatctcctaggcatcgtcgaagatttagacctagaa
aacgccatatgggaaattataaagaagaaaacagatgagaagataaatccatatacgccg
ttgatactacttagagagttaaaaaatgcgttgaaaagcagaataaaatacttctctgag
atacgcggcgaagatgccacaaaagttttagttctccaaccgcttgaccccacgtcgtta
gtaaaagaaaagctaaaagaggcaaaaagcgttatttacataagtgggacattgccgata
tcgcttttttctacaactctaggtctgataaaatacagccatatagatatatcatttagt
gagtatatcccacgtcaaaactatctatcgatagtagatttgggcgttacgacaaaattt
acagaaaggagcgaggatatgtacgtcaaaatagcgcagagaatagccgatataatcaac
atatctcccggaggggtcttggcggtgtttccttcatatgaggtattaaaaggcgttagg
aagtacctgagtatttcaataccacattggtacgaggggagccaggaggtggatttacat
aatctcccagatagatttttcataggggcagtggccagaggtagatatgcagaaggcgtt
gagtatgtacgagacggaaagaacctcctcagtacagtagcagtagtcggagtaccatat
cctgagccgtcgccatatttagaaaaaagagtagagtcattaaggccacgtctgggagaa
aaagcgtggaactctgtgtacctctattatgcaattatcgccgttagacaagcaataggc
cggctatttagaggacctggagatagaggcgtattgatatttttagatagacgctatgcc
gaaccagacatatggagtagtctttcagatatattaagcggttctctaatagtaaacgag
ctaggcgaggccaaagagaatattatacacttcttcacctccgtgttaaaagtcgccaaa
tag
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