Polynucleobacter ibericus: AOC20_00270
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Entry
AOC20_00270 CDS
T09789
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
piu
Polynucleobacter ibericus
Pathway
piu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
piu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AOC20_00270 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
piu03021
]
AOC20_00270 (rpoB)
03400 DNA repair and recombination proteins [BR:
piu03400
]
AOC20_00270 (rpoB)
Enzymes [BR:
piu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AOC20_00270 (rpoB)
Transcription machinery [BR:
piu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AOC20_00270 (rpoB)
DNA repair and recombination proteins [BR:
piu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AOC20_00270 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QWE08698
LinkDB
All DBs
Position
44268..48368
Genome browser
AA seq
1366 aa
AA seq
DB search
MNYSFTERKRVRKSFAKRVNNHQVPYLIATQLESYAKFLQADKPAMSRLTEGLQAAFTSA
FPIVSNNGYARMEYVSYQLSQPPFDVKECQQRGYTYHSALRAKVRLIIYDREAPTKVKEV
KESEVYMGEIPLMTENGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARII
PYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNNEQILANFFNFDHFSLTANGG
SMEFVPERLRGQLASFDVLDKNGVVVIQKDKRINAKHIRELEAAKTKTIAVPDDYLIGRV
VARNIVDPDSGEILAYANDEITEELLATLRDAGIKQLETIYTNDLDSGAYISQTLRTDET
ADQMAARIAIYRMMRPGEPPTEDAVEALFQRLFYSEDTYDLSRVGRMKVNSRLNRPEMEG
PMVLSNEDILDTIKSLVDLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRVERAVK
ERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRISALGPG
GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARLNEHGFLETPYRKVAN
SKVSDEVVYLSAIEEAKYVIAQANATIDKSGKLADELVSARQAGETMMVSPERIDFIDVA
PSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGLERIVAVDSGTVV
LAARGGIVDYVDANRVVIRVNDDETAAGEVGVDIYNLIKYTRSNQNTNINQRPIVKVGDR
VVRGDVVADGASTDLGELALGQNMTVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEEL
SVVARDTKLGSEEITRDISNLAESQLSRLDESGIVYIGAEVEAGDVLVGKVTPKGETTLT
PEEKLLRAIFGEKASDVKDTSLRVPSGMIGTVIDVQVFTREGIERDARAQAIIQEELQRY
RLDLNDQLRIVEGDAFMRLEKLLIGKVANGGPQKLAKGTKIDKEYLAGLDKYHWFDVRPA
DDEVASQVEAIKSSIEAKRKQFDEAFEEKRTKLTQGDDLQPGVTKMVKVYLAVKRRLQPG
DKMAGRHGNKGVVSKIAPAEDMPFMADGRPVDIVLNPLGVPSRMNVGQILETHLGWAAQG
IGKRIDEMVREHAKQTELRKFFKQLYNETGRIEDIDNFTDEQINVLAENLRQGLPFATPV
FDGATEAEIGRMLELAYPEDVAKSLKMTPSRQQMILCDGRTGDQFERPVTVGVMHVLKLH
HLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSD
DVAGRTKVYENIVKGEHTIDAGMPESFNVLVKEIRSLGIDIDMERN
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgaactatagcttcaccgaacgcaagcgagtccgtaaaagctttgctaagcgagtaaac
aaccaccaggtcccgtacctgatcgcaacgcagctggaatcctacgctaaatttttacag
gctgataagccggcaatgtctcgtcttaccgagggacttcaagctgcctttacatcagca
ttcccaattgtgtctaacaacggctatgcacgtatggaatacgtgtcttaccagttatca
cagccaccgtttgacgttaaagaatgtcaacaacgtggttacacataccactcagcctta
cgcgcaaaagttcgcttgattatttatgatcgcgaagcgcctactaaggttaaagaggta
aaagagagcgaagtctacatgggtgaaattccactcatgacagaaaacggctcttttgtg
atcaatggtactgagcgcgtcatcgtttctcagttgcaccgttccccaggcgtgttcttt
gaacacgataagggcaagacacatagctcaggtaagttgctgttctcagcacgtatcatt
ccttaccgtggttcatggctcgatttcgagtttgatccaaaagatattctctatttccgc
gttgaccgtcgtcgtaagatgcctgtcaccattttgctcaaagcaattggtttaaacaac
gaacagattcttgctaacttctttaactttgaccatttctcattgactgctaacggcggc
tcaatggaatttgtgccagagcgtttgcgtggtcagttagctagctttgatgtgctcgac
aagaatggcgttgtagtcattcaaaaagacaagcgtatcaatgcaaagcatattcgcgaa
ctcgaagctgcaaaaacaaaaacaatcgctgtaccagatgactatctaattggtcgggta
gttgcacgtaatattgttgatccagactccggtgaaatcttggcttacgctaatgatgaa
atcactgaagagttgttggcgacattgcgcgatgcaggcatcaagcaattagaaactatc
tacaccaacgatttggattctggtgcttacatttcacagacattgcgtactgacgaaaca
gcggaccaaatggctgctcgtatcgccatctaccgcatgatgcgtcctggtgagcctcca
acagaagatgctgttgaagccttgttccaacgcttgttctatagcgaagatacttacgat
ttgtcacgcgttggccgtatgaaggtcaacagccgtttgaaccgtccagaaatggaaggt
ccaatggttctgtcaaacgaagatatcctcgacaccattaagtccctggtagatttgcgt
aacggcaaaggcgaagtagacgatatcgatcacttaggtaatcgtcgtgtacgttgcgtt
ggtgaattggcagaaaaccaattccgtgctggtttgtcacgtgtggagcgtgcggttaaa
gaacgtctcggtcaagccgaaacagaaaacctcatgccgcatgacttgattaacagcaag
ccaatctcttctgcgattcgtgagttcttcggttcttcacagttatcccagtttatggac
caaaccaacccactctcagagatcacgcacaagcgtcgtatttctgcattgggacctggt
ggtttgacgcgcgagcgcgcaggcttcgaagtgcgcgacgtgcatccaacccactacgga
cgtgtttgcccaattgaaactccagaaggaccaaacattggtttgatcaactcactcgcg
ttgtttgcgcgtttgaatgagcatggtttccttgagaccccataccgtaaggttgctaac
agcaaggtaagcgatgaagtggtttacctctctgcgattgaagaagccaagtacgtgatt
gctcaggcaaatgcaacaatcgacaagagcggtaagttagctgatgaattggtttcagct
cgtcaagctggtgagaccatgatggttagcccggagcgcatcgatttcatcgacgttgct
cctagccaaatcgtttctgctgctgcttcattggttccattcttggagcatgatgatgcg
aaccgtgcgttgatgggtgcgaatatgcaacgtcaagcggttccttgcttgcgtccagat
aagccattggttggtaccggtttagagcgtattgttgcggttgactccggcacagtcgta
ttggcagcgcgtggcggtattgttgattacgtggatgcaaatcgtgtcgtgattcgcgtg
aacgacgatgagactgccgctggtgaagttggtgtggatatttataacctcatcaagtac
acccgttcaaaccaaaacaccaacattaaccagcgcccaatcgtgaaggttggcgatcgc
gtagtccgcggcgacgtagttgctgacggcgcatctaccgatttgggcgaattagcattg
ggtcaaaacatgactgtggcatttatgccatggaacggttacaacttcgaagattcaatc
ttgatctctgagaaggttgttgctgatgaccgctacacctctattcatattgaagagttg
tcagtagttgcacgtgacaccaagcttggttcagaggaaattacacgcgatatctctaat
ttggctgagtcacaactctcccgcttggatgagagcggtattgtttacatcggtgctgaa
gttgaagctggtgacgtattggttggtaaggtaactccaaagggcgagactactctcact
cctgaagagaagctcctccgtgcgatcttcggtgaaaaagcatctgatgttaaagatact
tctttgcgcgttccgtcaggaatgattggtactgttattgatgttcaggtcttcacccgt
gaaggtattgagcgcgatgcccgtgcacaagcaattattcaagaagaattacaacgctat
cgtttggacttaaacgatcagttgcgtattgttgaaggcgatgccttcatgcgtttagaa
aaactgttgattggcaaagttgccaatggtggtcctcagaaattagctaaaggcactaag
atcgacaaggaataccttgctggcttagataaataccattggtttgatgtgcgtccagca
gatgatgaagttgcctcacaagttgaagcgattaagtcctctatcgaagcgaaacgtaaa
cagtttgatgaagcttttgaagagaagcgcactaagcttacccagggtgatgatttgcaa
cctggtgtaacgaagatggttaaggtgtacttggcagttaagcgtcgcttacagcctggt
gacaagatggccggtcgtcacggtaacaagggcgtggtttctaaaatcgctccagcagaa
gacatgccatttatggctgacggacgccctgttgacatcgtcttgaacccattgggtgtt
ccttcccgtatgaacgttggtcagatcttggaaacccacttaggttgggctgctcaaggt
attggtaagcgtatcgacgagatggttcgtgagcacgctaagcaaactgaattgcgtaag
ttcttcaagcagctttacaacgaaacaggccgcattgaagacatcgacaacttcactgat
gagcagatcaatgttttggctgagaatctccgtcaaggcttgccatttgctactccagtg
tttgacggtgctacagaagctgaaatcggacgcatgctcgagttggcgtatccagaagat
gttgctaaatctttgaagatgactccttcacgtcagcaaatgattttgtgcgacggtcgt
actggcgatcaatttgagcgtccagtcactgtaggcgtaatgcacgtcttgaaactccac
catttggtcgatgacaagatgcacgcacgttcaaccggaccttactctttagtaacgcaa
cagccattgggcggtaaagctcagttcggtggtcagcgctttggtgagatggaagtctgg
gccctcgaagcatacggtgcttcatatgtcttgcaggaaatgctgacagtgaagtccgat
gacgtcgcaggccgtaccaaggtttacgaaaacatcgtcaagggcgagcacacgattgat
gctggcatgcccgaatccttcaacgtgctggtaaaagaaatccgttcgttgggtattgac
attgacatggagcgcaactga
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