Paracoccus kondratievae: F8A10_09100
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Entry
F8A10_09100 CDS
T06245
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pkd
Paracoccus kondratievae
Pathway
pkd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pkd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F8A10_09100 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkd03021
]
F8A10_09100 (rpoC)
03400 DNA repair and recombination proteins [BR:
pkd03400
]
F8A10_09100 (rpoC)
Enzymes [BR:
pkd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F8A10_09100 (rpoC)
Transcription machinery [BR:
pkd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F8A10_09100 (rpoC)
DNA repair and recombination proteins [BR:
pkd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F8A10_09100 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QFQ87574
LinkDB
All DBs
Position
1:complement(1810264..1814475)
Genome browser
AA seq
1403 aa
AA seq
DB search
MNQELATNPLNPLASPRQFDEIRISLASPEEILAWSYGEVKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGLVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTELSYAQLLTEEEYLDAQDQYGADAFT
ADIGAEAIRTMLANIDLAATAEQLREELKEATGELKPKKIIKRLKIVESFLESGNRPEWM
VMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGNNKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMVLGLYYTTMEREGMKGEGMAFASLEEVEHAL
AAGVVHLHSRITARLPQIDENGNEVIRRFETTPGRVRLGALLPRNAKAPFELVNRLLRKK
DIQNVIDTVYRYCGQKESVIFCDQIMALGFREAFRAGISFGKDDMVIPPNKWELVEETQD
QVKQFEQQYLDGLITQGEKYNKVVDAWSKCNDRVTDAMMKTISAVKKDEKGAEQEPNSVY
MMAHSGARGSVSQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIIREHDCGTERSITASAAVNDGEVVSPLSERVLGRV
AAEDVLVPGEDVVIVRKNELIDERKADEIETAGVQSVRIRSALTCESDDGVCALCYGRDL
ARGTLVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFIAAAQEGTVAFENES
TLENANGELIVMSRNMQLHIRSAQGDTLTSHKLFYGSKLFVREGEPVTRGQKMFEWDPYT
LPIIAEKAGVAKYVDLVSGLSVRDETDDATGMTQKIVTDWRSAPRGNELKPEIIIVDQNG
EPVRNEQGNPVTYPMSVDAILSVEDGQEIRAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIEPAQEGLEPVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILRILGIEALADYLIDEVQDVYRLQGVKINDKHIEVIVRQMLQKIE
IIDSGDTTLLKGEHVDRDEFEEENAKIEAKGGRPATGEPVLLGITKASLQTRSFISAASF
QETTRVLTEAAVQGKRDKLVGLKENVIVGRLIPAGTGGATARVRRIASDRDHEVIETRRA
EAEAAAALIAPEESAPVEAGGEE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaacttgccaccaatccgctgaacccgctggcctcgccgcggcagttcgat
gaaattcgcatctcgctggcctcgcccgaggaaatcctcgcctggtcctatggtgaggtg
aaaaagcccgaaaccatcaactaccgtacgttcaaacccgaacgtgacggcctgttctgc
gcccgtattttcggtccgatcaaagactacgaatgcctttgcggcaaatacaagcgcatg
aaatatcgcggcctcgtctgcgagaaatgcggcgtcgaggtcacgctgcaaaaggtccgg
cgcgagcgtatgggccatatcgagctggccgcgccggtcgcccatatctggttcctcaag
tcgctgccttcgcgcatcggcctgatgctggacatgacgctgcgcgatcttgagcgtatc
ctctatttcgaaaactacgtcgtgatcgaacccggtctgaccgagctgagctatgcccag
ctgctgaccgaagaggaatatctggacgcgcaggaccaatatggcgccgacgcctttacc
gccgatatcggcgccgaggcgatccgcaccatgctggccaatatcgaccttgccgcgacc
gccgaacagctgcgcgaagagctgaaagaggccaccggtgaactgaagccgaaaaagatc
atcaaacggctgaagatcgtcgagtccttcctggaatcgggcaaccgtccggaatggatg
gtcatgaccgtgatcccggtcatcccgccggaactgcgcccgctggtgccgctggatggc
ggccgctttgcgacctcggacctgaacgacctttatcgtcgggttatcaaccgtaacaac
cgtctgaagcggctgatcgagctgcgcgcgcccgacatcatcgtgcgtaacgaaaagcgg
atgttgcaggaatcggtcgacgcactgtttgacaacggccgccgtggccgtgtcatcacc
ggcaacaacaagcgtccgctgaagtcgctgtccgatatgctcaagggtaagcagggccgg
ttccgtcagaacctgctcggcaagcgcgtggacttttcgggccgttcggtcatcgtgacc
ggtcccgagctcaagctgcatcaatgcggcctgcccaagaagatggcgcttgagctgttc
aagcccttcatctactcgcgccttgaagccaaaggtctgtcgagcaccgtcaagcaggcc
aagaaactggtcgagaaagaacgtcccgaggtctgggatatccttgacgaggtgatccgc
gaacacccggtcctgctgaaccgggcgccgacgctgcaccgtctgggcatccaggcattc
gaaccgatcctgatcgaaggcaaggcgatccagctgcacccgctggtctgctcggccttc
aacgccgacttcgacggcgaccagatggccgtgcacgtgccgctgtcgcttgaggcgcag
cttgaagcccgcgtcctgatgatgtccacgaacaacgtgctgtcgcctgcgaacggcgcg
ccgatcatcgtgccgtcgcaggacatggttctgggtctttactacacgaccatggagcgc
gagggcatgaagggcgagggcatggcctttgccagcctcgaagaggtcgaacacgcgctg
gccgccggcgtggtgcatttgcattcccgcatcaccgcccgcctgccgcagatcgacgag
aacggcaacgaggtcatcaggcgctttgagaccacgccgggccgcgtccgtctgggtgcc
ttgctgccgcgcaacgccaaggctccgttcgagctggtgaaccgtctgctgcgcaagaag
gacatccagaacgtcatcgacaccgtctatcgctactgcggtcagaaggaatcggtgatc
ttctgtgaccagatcatggcgcttggcttccgcgaggcgttccgcgccggtatctcgttt
ggcaaggacgacatggtcatcccgccgaacaagtgggaactggtcgaagagacgcaggac
caggtcaagcagttcgaacagcagtatctggacggcctcatcacccagggtgagaaatac
aacaaggtcgtcgatgcctggtcgaagtgtaacgaccgcgtcaccgatgcgatgatgaag
accatctcggctgtcaagaaggacgagaaaggcgctgaacaagagccgaactcggtctac
atgatggcgcattcgggcgcccggggttcggtcagccagatgaaacagctgggcggcatg
cgcggcctgatggccaagccgaacggcgagatcatcgagacgccgatcatttcgaacttt
aaggaaggtctgaccgttcttgagtacttcaactctacccacggtgcgcggaagggtctg
tctgacacggcgctcaagacggcgaactcgggttacctgacccgccgtctggtcgacgtg
gcgcaggactgcatcatccgcgaacatgactgcggcacagagcgttcgatcaccgcttcg
gctgcggtcaatgacggtgaggttgtcagcccgctgtccgagcgcgttctgggccgtgtc
gcggctgaggacgttctggtcccgggcgaagacgtggtcatcgttcgcaagaacgagctg
atcgatgagcgcaaggccgatgagatcgaaacggcgggcgtccagtccgtccgcatccgc
tcggccctgacctgcgagtcggacgacggcgtttgcgcgctctgctatggccgcgacctc
gcgcgcggtacgcttgtcaacatcggcgaggcggtgggtattatcgccgcccagtcgatc
ggcgagccgggcacgcagctgaccatgcggaccttccacatcggcggtatcgctcagggt
ggccagcagtcctttatcgctgcggcgcaagagggcacggttgctttcgaaaacgaaagc
acgctggaaaacgccaatggcgagctgatcgtgatgagccgcaacatgcagctgcacatc
cgcagcgcccagggcgacacgctgaccagccacaagctgttctacggctcgaagctgttc
gtgcgtgaaggcgagccggtgacccgcggtcagaagatgttcgaatgggacccctatacc
ctgccgatcatcgccgagaaggcgggtgtggcgaaatatgtcgatctggtcagcggcctt
tcggtgcgcgacgagaccgacgatgccaccggcatgacccagaagatcgtaaccgactgg
cgctcggccccgcgtggcaacgagctgaagcccgagatcatcattgtcgaccagaacggc
gaaccggttcgtaacgaacagggtaacccggtcacctatccgatgtcggtcgacgccatc
ctctcggtcgaggacgggcaggagatccgggccggtgacgtggtggcgcgtatcccgcgc
gagggtgccaagaccaaggacatcaccgggggtctgccccgcgtggcggaattgttcgag
gcccgtcgtcccaaggatcacgcgatcattgccgaaatcgacggctatgtgcgctttggc
aaggactacaagaacaagcgccgcatcgctatcgagcccgcccaggaaggtctggagccg
gtcgagtacatggtgccgaaaggcaagcacatcccggtgcaggaaggcgacttcgtgcag
aagggtgactatatcatggacggcaacccggcgccgcatgacatcctgcgcatcctcggt
atcgaggcccttgccgattacctgatcgacgaggtgcaggacgtctatcgactgcagggc
gtgaagatcaacgacaagcacatcgaagtgattgttcgccagatgctgcagaagatcgag
atcatcgacagtggcgataccacgctgctgaagggcgagcatgtcgaccgcgacgagttc
gaggaagagaacgccaagatcgaagccaagggtggccgtccggccacgggcgagccggtg
ctgctgggcatcaccaaggccagcctgcagacccgcagctttatctcggccgcctcgttt
caggaaacgacgcgcgtgctgaccgaggctgccgttcagggcaagcgcgacaagctggtt
ggcctgaaagagaacgtgatcgtgggccggctgatcccggccggtaccggtggggcgacg
gcccgcgtgcgccggatcgcctcggatcgcgaccatgaggtgatcgagacgcgccgcgcc
gaggccgaagctgccgctgcgctgatcgcgccggaagaaagcgccccggtcgaggcgggc
ggcgaagagtga
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integrated database retrieval system
