Pseudomonas kurunegalensis: QQ992_02545
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Entry
QQ992_02545 CDS
T09327
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pkk
Pseudomonas kurunegalensis
Pathway
pkk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pkk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QQ992_02545 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkk03021
]
QQ992_02545 (rpoB)
03400 DNA repair and recombination proteins [BR:
pkk03400
]
QQ992_02545 (rpoB)
Enzymes [BR:
pkk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QQ992_02545 (rpoB)
Transcription machinery [BR:
pkk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QQ992_02545 (rpoB)
DNA repair and recombination proteins [BR:
pkk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QQ992_02545 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
WJD63193
LinkDB
All DBs
Position
584836..588909
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEK
LSLELVPQRLRGEVAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGR
TTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTLKIDT
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVSDDIVFLSAIEEADHVIAQASAAMNEKKQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
KVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKIDRMLEEQRKAAELRVFLTEVYNEIGGRQENLEEFTDAEILALAHNLKKGVPMATP
VFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccttacctcctggccatccagctggattcgtatcgcgaattcctgcaa
gcgggagcatccaaggatcagttccgcgacgtcggcctgcacgcggccttcaaatcggta
ttcccgatcatcagctactccggcaatgctgccctggagtacgtaggctatcgcctgggc
gaaccggccttcgatgtgaaggaatgtgtcctgcgtggcgtgaccttcgcggtcccactg
cgggtcaaggtgcgcctgatcatcttcgacaaggaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gttatcaacggtaccgagcgtgtgatcgtttcccagctgcaccgttcgcctggtgtgttc
ttcgaccacgaccgtggcaagacccacagctccggcaagctgctgtactccgctcgcatc
atcccttaccgcggctcctggctggacttcgagttcgacccgaaggactgcgtgttcgtg
cgtatcgaccgccgccgcaaactgccggcttcggtgctgctgcgcgccctgggctacagc
actgaagaagtgctgaacaccttctacaccaccaacgtgttccacatttccggcgaaaaa
ctcagcctggaactggtgcctcaacgtctgcgtggtgaagttgcagtcatggacatccat
gacgaaaccggcaaagtcatcgtcgagcaaggccgccgtattaccgcgcgccacatcaac
cagctcgaaaaagccggcgtcaagcagctggacgttccaatggaatacgtcctgggccgc
actaccgccaaggccattgtgcatccggctaccggcgagatcctggccgaatgcaacacc
gagatgaccaccgaactgctgatcaaggtcgccaaggcacaggttgtccgtatcgagacc
ctgtacaccaacgacatcgattgcggtccgttcatctccgacaccctgaagatcgacacc
accagcaaccagctggaagctctggtcgagatctaccgcatgatgcgtccaggcgagccg
ccaaccaaggatgcagccgagaccctgttcaacaacctgttcttcagcgccgagcgttac
gacctgtccgccgttggtcgcatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgagcaaggaagacatcgtcgaggttctgaagaccctggtcgatatc
cgtaacggcaaaggcatcgtcgacgacatcgaccacctcggtaaccgtcgcgtacgttgc
gttggtgaaatggccgagaaccagttccgcgttggcctggtgcgtgtagagcgcgcggtc
aaggaacgcctgtcgatggcggaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccggttgcggcggcggtgaaagagttcttcggttccagccagctgtcccagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgtgtctctgcactcggccct
ggcggtctgacccgtgagcgtgccggcttcgaagtccgagacgtacacccgacccactac
ggccgtgtgtgcccgatcgagacccctgaaggtccgaacatcggtctgatcaactccctg
gcagcctatgcccgcaccaaccagtacggcttcctggaaagcccgtaccgcgtggtgaag
gaaggcgttgtcagcgacgacatcgtgttcctgtcggccatcgaagaagccgatcacgtc
atcgcccaggcttcggccgcgatgaacgagaagaagcaactgatcgatgagctggtagcg
gttcgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgtt
tcgccgaagcaggttgtttccgttgctgcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcattgatgggttcgaacatgcagcgtcaggctgtaccaaccctgcgtgcc
gacaagccgctggtaggtactggcatggagcgcaacgttgcccgtgactccggtgtctgc
gtggttgctcgccgtggtggtgtgatcgactcggtcgacgccagccgtatcgttgttcgc
gttgccgacgacgaagtggaaaccggcgaagcaggtgtggatatctacaacctgaccaag
tacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggcgac
aaggttcagcgtggcgacatcatggccgacggcccgtccaccgacatgggtgagctggca
ctgggtcagaacatgcgcatcgcgttcatggcgtggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagaccgcttcaccaccatccacatccaggaa
ctgacctgtgtggcgcgtgacaccaagcttggcccagaggaaatcactgcggacatcccg
aacgtgggtgaagctgcactgaacaaactggacgaagccggtatcgtctacgtgggtgcc
gaagtcggcgctggtgacatcctggttggcaaggtcacgccaaaaggcgaaacccagctg
actccggaagaaaaactgctgcgcgcaatcttcggtgagaaggccagcgacgttaaggac
acctccctgcgtgtgccaaccggcaccaagggtaccgtcatcgacgtacaggtcttcacc
cgtgatggcgtagagcgcgacagccgcgccctggccatcgagaagatgcagctggacgag
atccgcaaggacctcaacgaagagttccgcatcgtcgaaggcgcaaccttcgagcgtctg
cgttctgccctgaacggtcaggtggtcgacggtggcgcgggcctgaagaaaggcaccgtg
atcactgacgaagtgctggacggtctggagcacggccagtggttcaaactgcgcatggct
gaagatgcactgaacgagcagctggaaaaggctcagcagtacatcgtcgaccgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggca
ccgggcgtactgaagatcgtcaaggtctacctggcaatccgccgtcgcatccagccgggt
gacaagatggccggtcgtcacggtaacaagggtgttgtctcggtcatcatgccggtcgaa
gacatgccgcacgatgccaacggtactccggtcgacgtcgtactgaacccgctgggcgta
ccttcgcgtatgaacgttggtcagatcctcgaaacccacctgggcctggcggccaagggg
ctgggcgagaagatcgaccgcatgctcgaagagcagcgcaaagcagctgaactgcgcgtg
ttcctgaccgaggtctacaacgagatcggtggtcgtcaggaaaacctcgaagagttcacc
gacgcagagatcctggctctggcccacaacctgaagaaaggcgtgccgatggctaccccg
gtcttcgacggtgccaaagagcgtgagatcaaggccatgctgaaactggctgacctgcca
gaaagcggccagatggtgctgttcgatggccgtaccggcaacaagttcgagcgtcctgtg
accgttggttacatgtacatgctcaagctgaaccacttggtggacgacaagatgcacgcg
cgttccactggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaagtgtgggcgctggaagcatacggcgcggcatac
accctgcaagaaatgctcacagtgaagtcggacgacgtgaacggccgtaccaagatgtac
aaaaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagagatccgttcgctcggtatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
