Pempheris klunzingeri: 139207187
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Entry
139207187 CDS
T11454
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pklu Pempheris klunzingeri
Pathway
pklu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139207187 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pklu03019
]
139207187 (clp1)
Enzymes [BR:
pklu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
139207187 (clp1)
Messenger RNA biogenesis [BR:
pklu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
139207187 (clp1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139207187
NCBI-ProteinID:
XP_070692936
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Position
9:14231818..14234482
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AA seq
440 aa
AA seq
DB search
MATEGVEKSEDAPAAGKVSTRFDLEKETELRFEVEAGEAAEQVELELLTGMAEVFGSELN
RNKKYTFGPGSKIAVFTWQGCSVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAERD
NERGPRVMVVGPTDVGKSTVCRLLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIER
PADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSRLAEVFSQRCEVNRKASVGGCIINT
CGWVKGSGYQALVHCASAFEVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERSK
ECRRDTRDEKIREYFYGFRGVSFYPFSFEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDTQ
LKLVPVTPGRDLTYHVLSVSSAEDGEEGARKGIVECPVCGFIVVTYVDTQTQVMKVLSPA
PRPLPRHTLLIMDIRFMDMK
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagagggtgtagaaaagagtgaagatgctccagcagctgggaaggtcagtacc
aggtttgacctggagaaggagactgaacttcggtttgaggtggaggcaggggaggcagca
gagcaagttgagctggagcttctcacaggaatggctgaggtgtttggctcagagttgaac
cgtaacaagaagtacacatttggaccgggctccaagatcgcagttttcacctggcaaggc
tgcagtgtgaatctttacgggaagccagaggtggcttacgtgtccaaggatactcccatg
ctgctctacctgaacacacacgctgccctagaacagatgagaaaacaagcagagcgggac
aatgagagggggccgagggtgatggtggtgggacctacagatgtggggaagtcaacagtg
tgccgcttgttattaagctatgctgtaagagtgggccggagaccaacactggtggaactg
gatgtcggacagagtggggtgtctgtacctgggacagtgtcagcactgtgtattgagcgt
ccggctgatgtggaggaaggtttctcagtccaggctcctttggtctaccactttggctct
acaaccccagggaccaacatcaaactttataataagctgacatcccgcctggcggaggtg
ttttcccagcgctgtgaggtgaacaggaaggccagcgtgggaggctgtataatcaacacc
tgtggctgggtgaagggctctggataccaggctctggtccactgtgcctctgccttcgag
gtggatgtcgtcctggtgctggaccatgaaaggctctacaatgaacttaaacgagacctc
cctcactttgtgcgggttgtgctcttacctaagtccgggggggtggtggagcgctccaag
gagtgccggcgggatactcgggatgagaagatccgcgagtatttttatggcttccgtgga
gtgtccttctaccctttttcctttgaagtgcgtttctcagatgttcgcatctacaagatc
ggggcaccatccatcccagactcatgcttgccgctgggaatgtctcaggatgacacacag
ctaaagctggtgcctgtgacaccaggcagagacctcacgtatcatgtgctgagcgtgagc
agtgccgaggatggagaagaaggtgctagaaagggtatagtggagtgccctgtatgtggt
tttattgtggtgacttatgtggacacgcaaacacaggtgatgaaagtgttgtccccagcg
cccagaccactgccgaggcacactctgcttatcatggacatacgcttcatggacatgaaa
taa
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