KEGG   Pseudomonas koreensis: AYO71_11940
Entry
AYO71_11940       CDS       T04647                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pkr  Pseudomonas koreensis
Pathway
pkr03030  DNA replication
pkr03410  Base excision repair
pkr03420  Nucleotide excision repair
pkr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pkr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AYO71_11940
   03410 Base excision repair
    AYO71_11940
   03420 Nucleotide excision repair
    AYO71_11940
   03430 Mismatch repair
    AYO71_11940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pkr03032]
    AYO71_11940
   03400 DNA repair and recombination proteins [BR:pkr03400]
    AYO71_11940
Enzymes [BR:pkr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AYO71_11940
DNA replication proteins [BR:pkr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AYO71_11940
DNA repair and recombination proteins [BR:pkr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AYO71_11940
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AYO71_11940
   MMR (mismatch excision repair)
    DNA ligase
     AYO71_11940
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AYO71_11940
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT
Other DBs
NCBI-ProteinID: AMT88225
LinkDB
Position
2693954..2696311
AA seq 785 aa
MTAAKTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAANPELITSDSPTQ
RVGSMALTAFTQVRHEIPMLSLGNAFEESDMREFDRRVNEGLDVPAGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGEGWPATLEVRG
EVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVSH
DIADTHIGNLKQLQKWGMPISHELKLAKGIDECLEYYRDIGERRNSLAYEIDGVVFKVNS
IADQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVITERRPDDARPVAIPESCPVCGS
HVERTQLVKRSKGKETFSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKSVEQ
LVDEGLVSSPADLYALKFDDIVDLEGFAEVSSNKLLKAIEDSKQPSLARFIYALGIPDVG
EETAKVLARSLGSLERVQQALPHVLTYLPDVGLEVAHEIHSFFEDAHNQQVISELLGHGL
QIQDQGELGAEFAASTTLGGLLDKLHIPFVGPGGAQKLADRFGSLEAVMNADWLDMRQAL
PEKQANSVREFFASPEHRQLAEQAEQQLRDFGMHWQSEKKVVEGLPLSGETWVLTGKVEL
MSRDVAKDHLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGVKVMDEEAFIAFLKT
HGVAV
NT seq 2358 nt   +upstreamnt  +downstreamnt
atgaccgccgccaaaacccgcattctagagctgcgcgctgagctggatcagcacaactat
cgctatcacgttctcgacgagccgagcattcccgatgccgaatacgaccgcttgtttcac
gagctcaaggcactggaagcggccaacccggaactgatcaccagcgattcgccgacccag
cgcgtcggtagcatggcgttgactgcgttcactcaggtgcgtcacgaaatcccgatgctc
agcctcggcaacgccttcgaagaatccgacatgcgcgagttcgatcgccgcgtcaacgaa
ggcctcgacgtgccggccggcgatctgtttggtggcggcgcggcggtggaatacagctgc
gagccgaagcttgatggcctggcggtcagcctgctgtatcaggatggtctgctggtgcgc
ggcgccacccgtggcgatggcaccaccggcgaagacatcagcgtcaacgtgcgcaccgtg
cgcaatattccgctgaagctgcatggcgaaggctggccggcgacgctggaagtgcgcggt
gaagtgttcatgtccaaggccggtttcgagcgcctcaatgcttcgcaactggaaatcggc
ggcaagaccttcgccaacccgcgcaacgcggcagcaggcagcctgcgccagctcgactcg
aagatcaccgccaatcggccgctggaattctgctgctatggcatcggccaggtgtctcac
gatatcgccgacacccacatcggtaacctcaagcagttgcagaagtggggcatgccgatc
agtcacgaactgaagctggccaagggcatcgacgagtgcctggagtattaccgcgacatc
ggcgagcgccgtaactcgctggcctatgaaatcgatggcgtggtgttcaaggtcaacagc
attgccgaccagcgggaactgggcttccgcgcccgcgagccgcgctgggcgatcgcgcac
aaattcccggcgatggaagaactcaccgagctgctcgacgtggaattccaggtcggccgc
actggtgcggtaactcccgtggcgcgcctgaaaccggtgaaagtcgccggcgtcaccgtg
gccaacgccacattgcacaacatggacgaagtcgcgcgtctgggcctgatgatcggcgac
acggtgatcattcgccgcgccggcgatgtgattccgcaagtggtgcaagtgatcaccgag
cgtcgccccgatgacgcgcgcccggtggccattcctgaaagttgcccggtgtgcggctcc
cacgttgaacgcacgcaactggtcaagcgcagcaagggcaaggaaaccttcagcgaaggc
gcggtgtatcgctgcgtcggccgactggcctgcggtgcgcaactgaaacaggcgatcatt
cacttcgtctcgcgccgggccatggacatcgaaggcttgggcgacaagagcgtcgagcaa
ctggtcgacgaaggtctggtcagttcgccggccgatctgtatgcgctgaagttcgacgac
atcgtcgatctggaaggcttcgccgaggtatcgagcaacaagcttctcaaagccatcgaa
gacagcaagcaaccgagcctggcacgtttcatctacgccctcggcattcccgatgtcggt
gaagaaacggcgaaagtgctggcgcgttcgctgggttcgctggagcgcgtgcaacaggcc
ttgccccatgtgctgacctacctgccggatgtcggcctggaagtggcgcacgagattcac
agtttctttgaggatgcgcacaaccagcaggtcatcagcgaattgctcggccatggtttg
cagattcaggatcaaggcgagttgggcgccgaattcgccgccagtaccacgctgggtggc
ttgctcgacaaactgcacattcctttcgtcggccccggtggtgcgcagaaactcgccgac
cgctttggctcgctggaagcagtgatgaacgctgactggctggacatgcgtcaggcattg
ccggagaagcaggccaactcggtgcgcgagttcttcgcctcgcctgagcatcggcaactg
gccgagcaagccgagcagcagttgcgcgatttcggcatgcattggcagagcgagaagaaa
gtcgtcgaaggtctgccgctgtccggggaaacctgggtgctgaccggcaaggtcgaactg
atgagccgggatgtggccaaggatcatctggaaagcctgggtgccaaggtcgccggttcg
gtgtcggcgaaaacccattgcgtggtcgcaggcccgggtgccggctcgaaactgaccaag
gccaacgagcttggtgtgaaggtcatggacgaggaagcgtttatcgccttcctcaaaacc
cacggcgtcgccgtctga

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