Pseudomonas koreensis: AYO71_19090
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Entry
AYO71_19090 CDS
T04647
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pkr
Pseudomonas koreensis
Brite
KEGG Orthology (KO) [BR:
pkr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pkr03016
]
AYO71_19090
Enzymes [BR:
pkr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
AYO71_19090
Transfer RNA biogenesis [BR:
pkr03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
AYO71_19090
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AMT89538
LinkDB
All DBs
Position
complement(4296971..4297510)
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AA seq
179 aa
AA seq
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MMDEVRRQEPSKRLFFALDCPPAQRKAIAQWRAELGLRSGKPVPADNFHLTLLFLGAVPL
AQIHGVCEAAGSVRIPGETLRIELDRLQVWHRAGVLSLAPEQAPPALLRLVYALEQAMLP
FGFEQPTHEFRPHLTLAREYRAPEPEARTPPEFFLRAERFALFESHKGRYRVVQDWPLI
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgaagtgcgcaggcaggaaccgtcgaaacggctgtttttcgctttggattgc
ccgccggcgcagcgcaaggcaatcgcccagtggcgcgcggaactgggcctgcgcagcggc
aaaccggtgccggcggataactttcatctgactctgcttttcctcggtgcggtgccgttg
gcgcagattcacggcgtctgcgaagcagcgggcagtgtgcgtattccgggcgaaacgttg
cgcattgagctggatcgcttgcaggtctggcatcgcgctggtgtgctatcgctggcaccg
gaacaggcaccgccggcgctgttgcgcctggtctacgcgctggagcaggcgatgctgccg
ttcggttttgaacaacccacccacgagttccgtccgcacttgacgctggcccgcgagtac
cgcgcgccggagccggaagcgcgcacgccgccggaattctttctgcgcgctgaacgcttc
gctttgttcgaatcgcacaagggccgctatcgggttgtgcaggactggccgctgatctga
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