Parvibaculum lavamentivorans: Plav_2730
Help
Entry
Plav_2730 CDS
T00580
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pla
Parvibaculum lavamentivorans
Pathway
pla03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Plav_2730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pla03021
]
Plav_2730
03400 DNA repair and recombination proteins [BR:
pla03400
]
Plav_2730
Enzymes [BR:
pla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Plav_2730
Transcription machinery [BR:
pla03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Plav_2730
DNA repair and recombination proteins [BR:
pla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Plav_2730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ABS64338
UniProt:
A7HWQ5
LinkDB
All DBs
Position
2937459..2941652
Genome browser
AA seq
1397 aa
AA seq
DB search
MNQEVMNLFNPTAPTQTFDQIKISIASPERILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSKVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERVLYFENYIVLEPGLTSLKERQLLTEEEYIDAQDQYGEDSFTA
GIGAEAIRELMMALDLEKIAADLRVEIAESTSELKPKKLAKRLKLIEAFIESGNKPEWMI
MTQIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLEAKGLSATVKQAKKLVEKERPEVWEILEQVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGSPIIVPSQDIVLGLYYVTIQKDNEPGEGMVFGSVSEIEHALA
VKAVTLHAKVKARYTTKDADGNSYTEVVDTTPGRMMVGELLPRHPNVPFDLVNRLLTKRD
ISKMIDVVYRHCGQKETVIFCDQIMALGFRQAFRAGISFGKDDMVIPEEKAKLVEETQTL
ATEYEQQYIDGLITQGEKYNKVVDAWAKCTDRVADVMMQKISAVQIDPETKREKQINSIY
MMAHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDSIITEEDCGTIGGITVQPVIEAGDVIVSLGTRVLGRT
TAEDVMNPATGEVLIPKNHLIDEADVDTIEEANVQGIKIRSVLTCEAANGVCGACYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDSSFIESNHAGTIKIVNRN
VVKDSNGVLVVMGRNVQVQIIDEHGGERASHKLTYGSRLKFDDGDKIERGQRISEWDPYT
MPMLTEVNGIAEFEDLVDGVSIREVADEATGISSRVVVDWRASPRGSDLRPAVVVKDKNG
KILKLANGNDARYLLSVDAILSVDNGAAVHAGDVLARIPTEGAKTRDITGGLPRVAELFE
ARRPKDHAIIAEATGRVEFGKDYKNKRRIIVHPVDESLEPIEYLIPKGKHISVQEGDVIE
KGEFILDGHPAPHDILAISGVEELAAYLVNEVQDVYRLQGVAINDKHIEVIVRNMLQKVE
VTSPGESITLPGEQLDRAEFDEMNAKLEAQGKTPATAVPVLLGITKASLQTRSFISAASF
QETTRVLTEAAVSGKVDQLVGLKENVIVGRLIPAGTGGMLQRLRGEAQNRDDKILEDQGG
ATPTASTEIKEPAEGAA
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaaccttttcaatccgacggcgccgacgcagacgttcgaccag
atcaagatttcgattgcgagcccggaacggatcctttcttggtcctatggcgagatcaag
aagccggaaacgatcaactatcgtacgttcaaaccggaacgcgacgggttgttctgcgcg
cgcatctttggcccgatcaaggattacgaatgcttgtgcggcaagtacaagcgcatgaag
tataaaggcatcatctgcgagaaatgcggtgtcgaagtgacgctgtcgaaggtccggcgc
gagcgcatgggccatatcgaactcgctgcgcccgttgctcacatctggttcctgaagtcg
ctgccgtctcgtatcggtcttttgctcgacatgacgctgaaggatctggagcgggtcctt
tatttcgagaactacattgttctggagcctggcctcacgtctttgaaagaacgccagctt
ctgacggaagaagaatatatcgacgcgcaggatcagtacggcgaagacagcttcactgcc
ggtatcggcgctgaggcaatccgcgaactgatgatggcgctcgatctcgagaagatcgca
gccgaccttcgcgtcgaaatcgcggagtcgacttccgagctgaagccgaagaagctcgcc
aagcgtctgaagcttatcgaagcgttcatcgaatccggcaacaagccggaatggatgatc
atgacgcagatcccggttattccgccggagctgcgcccgctcgtgccgctcgatggcggc
cggtttgcgacgtccgatctcaatgatctctatcgccgtgtcatcaaccgcaacaaccgt
cttaagcggctgatggaactgcgcgcgccggatatcatcatccgcaacgaaaagcgcatg
ctccaggaatccgtggatgcgctgttcgataacggccgccgcggccgcgtcatcacgggc
gcgaacaagcgtccgctgaagtcgcttgccgacatgctgaagggcaagcagggccgtttc
cgtcagaacctgctcggcaagcgcgtcgactattctggccgttcggtcatcgtggtgggt
ccggagctgaagctccaccagtgcggcctgccgaagaagatggcgctcgaacttttcaag
ccgttcatctattcgcggcttgaagcgaagggtctcagcgcgacggtgaagcaggcgaag
aagctcgtcgagaaagagcgtccggaagtttgggaaatcctcgagcaggtgatccgcgag
catccggtgttgctcaaccgcgcgcctacgctccaccgcctcggcattcaggcgttcgag
ccggtgctcatcgaaggcaaggcgatccagcttcatccgctggtttgcgcggccttcaat
gccgacttcgacggcgaccagatggccgtgcacgtcccgctgtcgctcgaagcgcagctg
gaagcgcgcgtgctgatgatgtcgacgaacaacattctgcatccggcgaacgggtcgccg
atcatcgttccgtcgcaggacatcgtccttggtctctattacgtgaccattcagaaggac
aatgaaccgggcgagggcatggtcttcggcagcgtttccgagattgagcacgcgcttgcc
gtcaaggcggtgacgctgcacgcgaaggtgaaagcccgctacacgacgaaggatgccgac
ggcaactcctacaccgaggtcgtggacacgacaccgggccgcatgatggtgggcgagctt
ctgccgaggcacccgaatgtgccgttcgatctcgtcaaccggctgctcacgaagcgtgac
atctccaagatgatcgacgtggtgtatcgccattgcggtcagaaagagacggtcatcttc
tgcgaccagatcatggcgctcggcttccgccaggcgttccgtgccggtatctctttcggc
aaggacgacatggtcatcccggaagagaaggcgaagctcgttgaggagactcagacgctc
gcgaccgagtatgagcagcagtacatcgacggcctcattacccagggcgagaagtacaac
aaggtcgtcgacgcgtgggcgaagtgcacggatcgcgtcgccgacgtgatgatgcagaag
atttctgctgtgcagatcgatccggagacgaagcgcgagaagcagatcaattcgatctac
atgatggctcactcgggtgcgcgtggttcgcccgcccagatgaagcagctcgcgggcatg
cgcggcctgatggccaagccgtccggcgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggccttaccgttctcgaatacttcaactcgacccatggcgcgcgtaagggcctt
gcggacacggcgttgaagacggcgaactcgggctatctaacgcgtcgtctggtggacgtt
gcgcaggattcgatcatcaccgaggaagactgcggtactatcggcggcatcacggtccag
cccgtgatcgaagcgggcgacgtgatcgtttcgctcgggacgcgcgttctcggccgtact
accgccgaagacgtgatgaatccggctacgggcgaagtcctcattccgaagaaccatctg
atcgacgaagcggatgtggacaccattgaggaagcgaacgtacagggcatcaagatccgc
tctgtgctcacctgcgaagctgcaaacggtgtttgcggcgcgtgttacggccgcgatctt
gcgcgtggtacgccggtgaacatgggtgaagcggtgggtgtcattgccgcgcagtcgatc
ggcgagccgggcacgcagcttaccatgcgtaccttccatatcggcggcacagcccaggtg
gtcgacagctcgttcatcgaatccaaccacgccggcacgatcaagatcgtgaaccgcaat
gtggtgaaggattcgaatggcgtgctcgtcgtcatgggccgcaacgtgcaggtgcagatc
atcgacgagcatggcggtgagcgggcttcgcacaagctgacctacggttcgcgtctgaag
ttcgacgatggcgacaagatcgagcgtggccagcggatttcggaatgggatccctacacc
atgccgatgctgaccgaagtgaacggcatcgcggagttcgaggatctggtggacggcgtt
tcgatccgcgaagtcgcggacgaagcaaccggcatctcgagccgcgtggtcgtcgactgg
cgcgcctctccgcgcggcagcgatctccggccggccgttgtggtgaaggacaagaacggc
aagatactgaagcttgcgaacggcaatgatgcccgttacctgctttcggtcgacgccatt
ctctcggtcgacaatggcgcggcggtccatgccggcgacgtgcttgcacgtatccccacg
gaaggcgccaagacgcgcgacatcacgggcggcctgccgcgcgtggcggagcttttcgag
gcgcgccgtccgaaggaccatgcgatcattgccgaagcaacgggtcgtgtggagttcggc
aaggactacaagaacaaacgccgcatcatcgtgcatcctgtggacgagagcctcgagccg
atcgaatacctgatcccgaagggcaagcacatctcggtgcaggaaggcgatgttatcgag
aagggcgagttcattctcgacggtcaccccgcgccgcacgacatcctggcgatttcgggt
gtggaggaactggctgcctatctcgtgaatgaagtgcaggacgtctaccgtctgcagggc
gtggcgatcaacgacaagcatatcgaagtgatcgtccgcaatatgctgcagaaggtcgaa
gtgacgagcccgggcgagtcgatcacgctgccgggcgaacagctcgaccgtgcggaattc
gacgaaatgaacgccaagctcgaggcgcagggcaaaacaccggcgacagccgttccggtt
ctgctcggcatcaccaaggcgagcctccagacgcgatccttcatctcggcggcgtcgttc
caggaaaccacacgcgtcctcaccgaggcggcggtttccggcaaggtcgaccagcttgtc
ggtctgaaagaaaacgtcatcgtgggccggcttattccggctggcactggcggcatgctt
cagcgtctgcgcggcgaagcgcagaaccgcgacgacaagatcctcgaggaccagggcgga
gccactccgaccgcgtcgacggagatcaaggagccggccgaaggcgcagcttga
DBGET
integrated database retrieval system
