Pseudomonas lalkuanensis: FXN65_22310
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Entry
FXN65_22310 CDS
T07120
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
plal
Pseudomonas lalkuanensis
Pathway
plal03410
Base excision repair
plal03430
Mismatch repair
plal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
plal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FXN65_22310 (recJ)
03430 Mismatch repair
FXN65_22310 (recJ)
03440 Homologous recombination
FXN65_22310 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plal03400
]
FXN65_22310 (recJ)
DNA repair and recombination proteins [BR:
plal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FXN65_22310 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FXN65_22310 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FXN65_22310 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
RecJ_OB
DHH
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
QEY64666
UniProt:
A0A5J6QV04
LinkDB
All DBs
Position
complement(4830648..4832363)
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AA seq
571 aa
AA seq
DB search
MRIEHRALPDVLPDLGDLPPLLTRLYASRGVQSAAELDKSLARLIPYQQLKGIDAAVELL
VEALEKRQRILYVGDFDADGATASSVGVLGLRMLGAFHVDYLVPNRFEYGYGLTPEIVAV
ALERRPDLLVTVDNGISSVEGVAAAKAAGLKVLVTDHHLPGPELPAADAIVNPNQPGCDF
PSKSLAGVGVIFYVLMALRARLRELDWFARAGLKEPNLGDLLDLVALGSVADVVPLDANN
RILVHQGLARIRAGRARPGLKAILEVAGRPAGRITSTDLGFILGPRLNAAGRLDDMSLGI
ECLLCEDEAQARDMAVQLDQLNQDRKAIEQGMQREALAQLKNLPIEDMPFGLCVFEPDWH
QGVIGILASRLKERYHRPTIAFADAGDGLLKGSARSVPGFHIRDALDAVAARHPGLISKF
GGHAMAAGLSLPVENFGAFAAAFDAETRRQLDEDDLTGRLLSDGQLSIEEFHLELARALR
LAGPWGQHFPEPVFHGVFQIVQQRLVGERHLKLVLKSECGSVQLDGIAFNIDREQWPNAS
VRWAELAYKLDVNEFRGQESVQLMVAHIAPR
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgaacaccgcgccctgcctgatgtcctgcccgacctgggcgacctgccaccg
ctgttgacccgcctctatgcgtcccgtggcgtgcaatcggcagccgagctggacaagagc
ctggcgcggttgatcccgtaccagcagctcaagggcatcgacgcggcggtggaactgctg
gtcgaagccctggaaaagcgccagcgcatcctctacgtcggcgacttcgatgccgacggc
gccaccgccagcagcgttggcgtactcggcctgcgcatgctcggtgccttccatgtcgac
tacctggtccccaaccgtttcgaatacggctacggcctgacgccggaaatcgtcgccgtg
gccctggagcgccgtcccgacctgctggtgactgtggataacggcatctccagcgtcgaa
ggcgtagccgccgccaaggccgccgggctcaaagtgctggtcaccgaccaccacctgccc
gggccggaactgccggcggcggatgccatcgtcaaccccaaccagcccggctgcgacttc
cccagcaagtccctggccggtgtcggcgtcatcttctacgtgctgatggccctgcgcgcg
cgcctgcgcgagctggactggttcgcccgcgccggcctcaaggaacccaacctcggcgac
ctgctcgatctggtggccctgggcagcgtggccgatgtggtgcccctggacgccaacaac
cgcatcctggtccaccagggcctggcgcgcatccgcgccggtcgcgcccgacccgggctc
aaggcgatcctcgaagtcgccggacgcccggcaggacgcatcacctccaccgacctcggc
ttcatcctcggcccgcgcctgaacgccgctggccgcctggacgacatgagcctgggcatc
gaatgcctgctctgcgaagacgaggcccaggcccgcgacatggcggtgcaactggaccag
ctcaaccaggaccgcaaggccatcgagcagggcatgcagcgcgaggccctggcccagctg
aagaacctgcccatcgaggacatgcccttcggcctctgcgtgttcgagccggactggcac
cagggcgtgatcggcatcctcgcctcgcgcctcaaggagcgttaccaccgcccgaccatc
gccttcgccgatgccggcgatggcctgctcaagggctcggcgcgctcggtgccgggcttt
cacatccgcgatgcgctggatgccgttgccgcgcgccatcccggcctgatcagcaaattc
ggcggtcacgccatggcggccggcctgtccctgcctgtggaaaacttcggtgcattcgcc
gccgccttcgacgctgagacccgccgccagctcgatgaagatgacctcaccggtcgtctg
ctctccgacggccagctgagcatcgaggaattccatctggaactggcccgcgccctgcgc
ctggccggcccctggggccagcatttccccgagccggtgttccacggcgtgttccagatc
gtccagcagcgcctggtcggagagcgccacctgaagctggtgctcaagagcgagtgcggc
tcggtacagctggacggcatcgccttcaacatcgatcgcgagcaatggcctaacgccagc
gtccgctgggccgaactggcctacaagctcgacgtgaacgaattccgtggccaggaaagc
gtgcagctgatggtcgcccacatcgccccgcgctga
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