Plantibacter sp. PA-3-X8: EAO79_09165
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Entry
EAO79_09165 CDS
T05731
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
plap
Plantibacter sp. PA-3-X8
Pathway
plap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EAO79_09165 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plap03021
]
EAO79_09165 (rpoB)
03400 DNA repair and recombination proteins [BR:
plap03400
]
EAO79_09165 (rpoB)
Enzymes [BR:
plap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EAO79_09165 (rpoB)
Transcription machinery [BR:
plap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EAO79_09165 (rpoB)
DNA repair and recombination proteins [BR:
plap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EAO79_09165 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AZH83048
UniProt:
A0A3G8VB51
LinkDB
All DBs
Position
1921498..1924989
Genome browser
AA seq
1163 aa
AA seq
DB search
MAAARNATTNSPKNGRGASRLSFAKITDTLTVPDLLALQTESFDWLVGNDVWKARVEEAT
QAGRQDLPTKSGLDEIFEEISPIEDLGETMQLSFANPYLEPEKYSIDECKERGKTYAAPL
YVEAEFMNHLTGEIKTQTVFMGDFPLMTERGTFIINGTERVVVSQLVRSPGVYFESAQEK
TSDKDIFSARVIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGMTSEEILEEFK
GYESIELTLEKDTILTKEDALRDIYRKLRPGEQVAAEAARALLDNFYFNSKRYDLAKVGR
YKINNKLGLDKPLSDSVLTTDDIVATIKYLVALHRGTATLPGVRNGKPVDLRLDTDDIDN
FGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFG
TSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGP
NIGLIGSLASFARINSFGFIETPYRRVVDGRVTEDIDYLTAMEEDNYIVAQANAPLKSDG
HFQEDRVLARKKGGEVDLIPSEEIGYMDVSPRQMVSVATSLIPFLEHDDANRALMGANMQ
RQAVPLLMSDSPLVGTGMEGYAAIDAGDVVTADKAGVVQEVSAESVTIQLDEGGTQTYYL
RKFDRSNQGTSYNNRVIVSEGARIEAGEVIADGPATENGELALGKNLLVAFMTWEGHNFE
DAIILSQNLVKDDVLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPELLKDLDERGIIRI
GAEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEAGTIIAVKV
FDAQDGDDELGSGVNQRVVVYIAQKRKITEGDKLAGRHGNKGVIAKILPVEDMPFLEDGT
PVDVILNPLGIPGRMNFGQVLEIHLGWIAKQGWNVEGKPSWAKKLPAAAHSAEPNTKVAT
PVFDGASEEEIAGLLDSTNVTRDGDRLIGSSGKARLFDGRSGEPFPAPVSVGYMYILKLH
HLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSD
DILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADGTAVSLRDTDDDA
FRAAEELGINISSRFESSSIDEI
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgcgcgcaacgcaaccaccaactcacccaagaacggccgcggagcatcccgc
ctctcgttcgcgaagatcaccgacacgctcacggttccagacctcctggctctgcagacc
gagagcttcgactggctggtcggcaacgacgtgtggaaggcacgcgtcgaagaagccacc
caggccggccgacaggacctgcccacgaagagcggcctcgacgagatcttcgaggagatc
tcgcccatcgaggacctcggcgagacgatgcagctctccttcgccaacccgtacctcgag
cccgagaagtactccatcgacgagtgcaaggaacgcggcaagacctacgcggccccgctc
tacgtcgaggccgagttcatgaaccacctcaccggtgagatcaagacccagacggtcttc
atgggcgacttcccgctcatgaccgagcgcggtaccttcatcatcaacggcaccgagcgt
gtcgtcgtctcgcagctcgtccgcagcccgggcgtgtacttcgagtcggctcaggagaag
acctccgacaaggacatcttctccgctcgcgtcatcccgagccgcggtgcctggctcgag
ttcgagatcgacaagcgcgaccaggtcggcgtccgcatcgaccgcaagcgcaagcagtcc
gtcaccgtgttcctcaaggcgctcggcatgacgagcgaggagatcctcgaggagttcaag
ggctacgagtcgatcgagctcaccctcgagaaggacacgatcctcaccaaggaggacgcg
ctccgcgacatctaccgcaagctccgtccgggcgagcaggtcgcagccgaggccgcgcgt
gcgctcctcgacaacttctacttcaactcgaagcgctacgaccttgcgaaggtcggccgg
tacaagatcaacaacaagctcggtctcgacaagccgctcagcgactccgtcctgacgacc
gacgacatcgtcgccacgatcaagtacctcgtcgccctgcaccgcggcacggccaccctc
ccgggtgtccgcaacggcaagcccgtcgacctccgtctcgacacggacgacatcgacaac
ttcggcaaccgtcgcattcgcgccgtcggcgagctcatccagaaccaggtccgcaccggt
ctgtcccgcatggagcgcgtcgtccgcgagcgcatgaccacgcaggacatcgaggccatc
acgccgcagaccctgatcaacgtgcgccccgtcgtcgccgcgatcaaggagttcttcggg
acctcgcagctgtcgcagttcatggaccagaacaacccgctcgcgggcctgacccacaag
cgtcgcctctcggcgctcggccccggtggtctctcgcgtgagcgtgcaggcgtcgaggtg
cgagacgtccacccgtcgcactacggccgcatgtgcccgatcgagaccccggaaggcccg
aacatcggcctcatcggttcgctcgcatcgttcgcgcggatcaactcgttcggtttcatc
gagaccccgtaccgtcgcgtcgtcgacggccgggtcaccgaggacatcgactacctgacc
gcgatggaagaggacaactacatcgtcgcgcaggccaacgctccgctgaagagcgacggc
cacttccaggaggaccgcgtcctcgcccggaagaagggcggcgaggtcgacctcatcccg
tccgaggagatcggctacatggacgtctccccgcgccagatggtgtcggtcgcgacctcc
ctcatcccgttcctcgagcacgacgacgcgaaccgcgcactcatgggtgccaacatgcag
cgtcaggccgtcccgctcctcatgtcggactcgccgctcgtcggtaccggtatggagggc
tacgcagccatcgacgcgggtgacgtcgtcaccgccgacaaggccggcgtcgtccaggag
gtgtcggcagagtccgtcaccatccagctcgacgagggtggcacgcagacctactacctg
cgcaagttcgaccgctccaaccagggcacgagctacaacaaccgcgtcatcgtctccgag
ggtgcacgcatcgaggccggcgaagtcatcgccgacggccccgccacggagaacggcgag
ctcgcgctcggcaagaacctcctcgtcgccttcatgacgtgggagggtcacaacttcgag
gacgcgatcatcctcagccagaacctggtgaaggacgacgtcctctcctcgatccacatc
gaggagtacgaggtcgacgcccgcgacaccaagctcggcaaggaggagatcacccgtgat
ctcccgaacgtcagcccggagctgctcaaggacctcgacgagcgcggcatcatccgcatc
ggtgccgaggtccgccccggcgacatcctcgtcggcaaggtcacgccgaagggtgagacc
gagctctccgccgaggagcgcctgctccgcgccatcttcaacgagaagagccgcgaagtc
cgcgacacctcgctgaaggttccccacggtgaagccggcacgatcatcgccgtcaaggtg
ttcgacgcacaggacggcgacgacgagctcggctcgggcgtcaaccagcgtgtggtcgtc
tacatcgcccagaagcgcaagatcaccgagggcgacaagctcgccggccgtcacggcaac
aagggtgtcatcgcgaagatcctgcccgtcgaggacatgccgttcctcgaggacggcacg
ccggtcgacgtcatcctcaacccgctcggtatccccggtcgaatgaacttcggtcaggtc
ctcgagatccacctggggtggatcgcgaagcagggctggaacgtcgagggcaagcccagc
tgggccaagaagctcccggctgccgcgcactcggccgagccgaacaccaaggtcgcgacc
ccggtgttcgacggcgcctccgaggaggagatcgccggtctgctcgactcgaccaacgtc
acccgtgacggcgaccgcctcatcggttcctccggaaaggcccgtctgttcgacggccgc
tccggcgagccgttcccggcaccggtctcggtcggctacatgtacatcctcaagctgcac
cacctcgtggacgacaagatccacgcgcgttcgacgggtccgtactcgatgatcacgcag
cagccgctcggtggtaaggctcagttcggtggacagcgcttcggtgagatggaggtctgg
gccctcgaggcctatggagccgcgtacgcgctccaggagctcctgaccatcaagtccgac
gacatcctcggccgcgtcaaggtgtacgaggccatcgtcaagggcgagaacatccaggag
ccgggtatccccgagagcttcaaggtgctcatcaaggagatgcagtcgctgtgcttgaac
gtcgaggtcctctcggccgacggcaccgcggtgagcctgcgcgacaccgacgacgacgcg
ttccgcgccgccgaggagctcgggatcaacatttcctccaggttcgagtcgtcgtccatc
gacgagatctaa
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