Plantactinospora sp. BB1: C6W10_12935
Help
Entry
C6W10_12935 CDS
T05391
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
plat
Plantactinospora sp. BB1
Pathway
plat00040
Pentose and glucuronate interconversions
plat01100
Metabolic pathways
plat02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
plat00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
C6W10_12935
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
C6W10_12935
Enzymes [BR:
plat01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
C6W10_12935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-ProteinID:
AVT37218
LinkDB
All DBs
Position
complement(2977858..2978985)
Genome browser
AA seq
375 aa
AA seq
DB search
MTPRHLGAPRPGPVAGPAAHRPRTAPSRPATRRSPLARHRGRVAAGLVGVLGLALPGAAG
PAQAGAYDRTATTGNATILCTDAPIGFASVNALGLNGTTGGAGGPTVTVTTAAALEDYAG
RAGPFVIRISGRIQLDDMVTVVANKSILGVGSTAEITGGGLQMGSTTRPGNNVIIRNIRF
TGAEDDSISVTNKAHHVWIDHNDLSDGYDGLLDIKRESDYVTVSWNRFHQHSKSSLVGHS
DTYTADVGKLRVTYHHNFFDGTDQRHPRVRFADPVHVFNNYYRNNALYGIASTENAGLMV
EGNYFENVAHPIYVGYDKSGPGRVVERNNLYVNSGAPQTAGTVVEPRGFYPYTVDPPASV
PGTVSGGVGVGRVCG
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgacacctcgacacctcggcgccccgcgccccggacccgtcgccggacccgccgcccat
cggccccgtaccgccccgtcccgtcccgccacccgtcgcagtccgctcgcccggcaccgg
ggccgggtcgccgccggcctggtcggggtactcggcctggccctgcccggtgccgccgga
ccggcccaggccggggcgtacgaccggaccgccacgacgggaaacgcgacgatcctctgt
acggacgccccgatcgggttcgcctcggtcaacgccctcggcctcaacggcaccaccggc
ggcgcgggcgggccgacggtgaccgtgaccaccgccgccgcgctggaggactacgccggg
cgggccgggcccttcgtcatccggatctccggtcggatccagctcgacgacatggtgacc
gtggtggcgaacaagagcatcctcggcgtcggcagcaccgccgagatcaccggcggcggc
ctccagatgggctccaccacccggccgggcaacaacgtgatcatccggaacatccggttc
accggcgccgaggacgactcgatcagcgtcaccaacaaggcccaccacgtctggatcgac
cacaacgacctctccgacggctacgacgggctgctcgacatcaagcgggagtcggactac
gtcacggtctcctggaaccggttccaccagcacagcaagtcgtcgctggtcgggcactcc
gacacgtacaccgccgacgtggggaagctgcgggtgacgtaccaccacaacttcttcgac
ggcacggaccagcggcatccccgggtgaggttcgcggacccggtgcacgtcttcaacaac
tactaccggaacaacgcgctctacggcatcgcctccaccgagaacgccggcctgatggtc
gagggcaactacttcgagaacgtggcccacccgatctacgtcgggtacgacaagagcggc
cccggccgggtcgtcgagcgcaacaacctctacgtcaactcgggcgccccgcagaccgcc
ggcacggtggtcgagccgcgcggcttctatccgtacaccgtggacccgccggccagcgtg
ccgggcaccgtgtcgggcggagtcggcgtgggcagggtctgcggctga
DBGET
integrated database retrieval system
