Plectropomus leopardus (leopard coralgrouper): 121946879
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Entry
121946879 CDS
T07454
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep04510
Focal adhesion
plep04512
ECM-receptor interaction
plep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121946879 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121946879 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121946879 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
plep00535
]
121946879 (col9a3)
Proteoglycans [BR:
plep00535
]
Extracellular matrix (ECM) proteoglycans
Others
121946879 (col9a3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
121946879
NCBI-ProteinID:
XP_042347620
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All DBs
Position
8:25485739..25507704
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AA seq
678 aa
AA seq
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MAVFSALWVLLLCQLLTSSSAQRPGPRGSPGLQGPPGPPGRDGTDGKPGPAGLPGKAGPK
GKAGISGVAGKPGLPGLPGVDGLTGPDGPAGKDGPAGEAGDAGPPGPPGAPGRGRPGAAG
LPGTNGLPGGVGPQGPAGAEGLPGLPGPPGLDGPPGLPGTLHDLSGDLLCPAICPPGPSG
PSGMPGFKGHTGHKGDKGEPGKNGEKGDPGPPGPPGIPGTVGLQGPRGLRGLQGPMGSVG
DRGLPGFRGKPGIAGIIGKTGDPGEKGPQGFKGPKGEIGKIGPKGGPGGSGPKGEPGIPG
RDGKDGTPGLDGEKGDAGRHGAVGEKGPNGLPGLQGKAGAKGSKGEVGEVGKPGETGPSG
EPGIPGEIGVPGERGIAGPRGVAGAIGPVGNPGPQGVKGFQGVKGALGDPGLPGPTGIRG
EFGERGPLGASGAKGDMGVAGSDGLPGENGEPGPFGPVGQKGESGKRGELGPKGVTGPQG
ELGARGPPGKPGLMGFQGEQGLPGIAGKPGVPGRLASEQHIRELCGSMIDDQIAQLAANL
RRPLAPGMVGRPGPAGSPGKPGVAGSIGHPGARGPPGYRGLPGELGDPGPRGDVGEQGDK
GSIGKAIDGPPGDQGYQGLPGVPGIVKDGRDGSPGDPGEPGEPGRVGRTGHQGPPGICDT
SACQGAAAAGKSSNPKNH
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcggtattctctgcgctttgggtgctcttactgtgccagcttttaacatcatcctca
gcccagaggccaggccccagaggatctcctgggctccaaggacccccagggccaccgggg
agggatggcactgatggcaaacctggacctgctggtctgccggggaaagcaggtcccaaa
gggaaagcaggtatttcgggggttgcaggaaaaccaggcctgccaggacttccaggggtg
gatggtttgacaggtcctgatggtcctgctgggaaagatggacccgcaggggaagctggt
gatgctggacctcctgggccccctggagctcctggcagagggagaccaggagccgcagga
ctacctggaaccaacggattgccgggcggagtcggaccacagggtccagcgggtgctgag
ggtcttccaggacttcccggacctcctggccttgatggaccaccaggtcttcctggtact
cttcatgatcttagcggtgacctactgtgtcctgcaatctgcccccctggtccctctggt
ccttctgggatgccaggattcaagggtcacactgggcacaaaggagacaagggagagcct
ggaaaaaatggagagaagggtgaccctggtccacctggcccaccaggtatccctgggact
gtgggtctgcagggcccacgtggtctcagaggtttacaaggcccgatgggatctgtagga
gacagagggctgcccggtttcagaggcaaacctggtatcgccggcatcattggaaagaca
ggtgatccgggagaaaagggaccacagggattcaaaggacccaaaggagaaattggtaaa
attggtcccaaaggaggtcctggaggatctggacccaaaggggagcctggtattcctggc
agagatggcaaagatggtacaccaggattagatggcgagaagggtgatgctggacgccat
ggggcagttggagagaaaggacctaacggccttcctggtctacaaggaaaagctggtgca
aagggctctaaaggagaagttggtgaagtggggaagcctggggagacaggaccctctgga
gagccaggtattcctggtgagattggcgtaccaggagagagggggatagcaggacccaga
ggagtggctggagctatcggaccggtgggcaaccctgggcctcagggagtaaaaggcttc
cagggggtaaaaggagccttgggtgatccaggtcttccaggtccgacaggaatccgtgga
gaatttggtgaaaggggtccacttggagcatctggagccaaaggagacatgggtgtggca
ggaagtgatggtttgccaggagaaaatggagaacctggtccgtttggcccagttggacaa
aaaggagagtctggaaagcggggtgaactggggccgaagggcgtgacaggtccacaagga
gagcttggggcgagagggcctccagggaaaccaggactaatgggcttccaaggggagcag
ggtctgcctggaattgcaggaaagccaggtgtacctggtagactggcaagtgagcagcac
atcagagagctgtgtggctcgatgatcgatgatcagattgcacagctggctgctaacctt
cgaagacctctggcccctggaatggtgggccgccccggccctgctgggtctccaggaaag
ccaggagttgctggctctatcgggcatccaggtgcccgtggaccaccagggtacagaggg
ctgccaggagaacttggagacccaggtcccagaggtgatgttggtgagcagggtgataag
ggatccatcggcaaagccattgatggcccgcctggagaccaaggataccagggtcttcca
ggagttcctggaattgtcaaagatgggcgtgatggatctcccggagatccaggtgagcct
ggagagccaggcagggtaggtaggactgggcaccagggacctcctggaatctgtgacaca
tcagcctgccagggagcagcggccgctggaaaatcctccaaccccaaaaatcattaa
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