Plectropomus leopardus (leopard coralgrouper): 121948015
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Entry
121948015 CDS
T07454
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121948015 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plep03019
]
121948015 (clp1)
Enzymes [BR:
plep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
121948015 (clp1)
Messenger RNA biogenesis [BR:
plep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121948015 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
TniB
ATP_bind_1
MMR_HSR1
AAA_16
AAA_22
AAA_18
Motif
Other DBs
NCBI-GeneID:
121948015
NCBI-ProteinID:
XP_042349180
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All DBs
Position
9:18021904..18026448
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AA seq
441 aa
AA seq
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MATEGVEKASEESPVPGKSSTRFDLEKETELRFEVEAGEAAEQVELELLTGMAEVFGSEL
NRNKKYTFGPGSKIAVFTWQGCSVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
DNERGPRVMVVGPTDVGKSTVCRLLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTTCLAEVFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASAFEVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRDARDEKIREYFYGFRGVTFYPFSYEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSAEDGEEGARKGIVESPVCGFIVVTNVDTQAQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagagggtgttgaaaaggcgagtgaggaatcccctgtacctgggaagtcgagc
accaggtttgacttggagaaggagactgaactgaggtttgaggtggaagcaggagaggca
gcagagcaagttgagctggagctcctcactggaatggctgaggtttttggctcagagctg
aaccgcaacaagaagtacacatttggaccaggttccaagatcgcagttttcacctggcaa
ggctgcagtgtaaatctttatggaaagccagaggtggcttacgtgtccaaggatactccc
atgctgctctacctgaacacacatgctgccctggaacagatgagaaaacaagcagagcgg
gacaatgaaagggggccaagggtgatggtggttggacctacagatgtggggaagtcaacg
gtgtgccggctgcttttaagctatgctgtcagggtggggcggaggccaacactggtggaa
ctggatgttggacagagtggggtgtctgtacctgggacagtatctgcactgtgcattgag
cggccggcagatgtggaggagggtttctcagtgcaggctcctttggtctaccactttggc
tctactaccccggggaccaacatcaagctttacaacaagctgacgacatgcctggccgag
gtgttttcccagcgctgtgaggtgaacaggaaggccagcgtgggaggttgtatcatcaac
acctgcggctgggtgaaaggctctggataccaggctctggtccactgtgcctctgccttc
gaggtggacgtggtgctggtgctggaccacgagaggctctacaatgaactcaaacgagac
ctccctcactttgtacgggttgtgctgctacccaagtccgggggggtggtggagcgctct
aaggagtgcaggcgggatgctcgggatgagaagatccgtgagtatttctacggcttccgt
ggagtgaccttctaccccttttcatacgaagtacgtttctcagacgtccgcatctataag
atcggagcaccatccatccccgactcatgcttgccactaggaatgtctcaggatgacacg
cagctaaagctggtgccggtgacaccagggagagacctcacgtatcatgtgctgagcgtg
agcagtgccgaggacggagaggaaggtgctagaaagggaatagttgaaagtccagtgtgt
ggctttattgtggtgacaaatgtggacacgcaagcacaggtgatgaaggtgctgtcacca
gctcccagaccactgcccagacacactctgcttatcatggacatccgcttcatggacatg
aaatga
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