Phaethon lepturus (White-tailed tropicbird): 104619507
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Entry
104619507 CDS
T08325
Symbol
CNOT1
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104619507 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plet03019
]
104619507 (CNOT1)
Messenger RNA biogenesis [BR:
plet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104619507 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104619507 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
104619507
NCBI-ProteinID:
XP_010283700
LinkDB
All DBs
Position
Unknown
AA seq
2384 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKXXXXXXXXXXQELLYVVPFVAKVLESSVRSVVF
RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNL
DEQLSAPKKDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAP
HITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDS
EESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAA
AQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAER
MPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIY
DKCMTELEQHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDA
TSGADADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLI
RNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLM
RINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKA
EYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYR
AQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVG
VLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAP
GFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILY
KGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKV
DMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNI
QLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIAN
QLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKN
PAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7155 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcctacgccattgacaatccattgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctcgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagtttatcaaacagaaactcccagatcttttgcgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcctttggggtaggacag
gaacagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggttatggcttttgtacaagtgttgaagaatgtcgcaacataatcatgcagttt
ggtgttcgggaagtcacagctgcccaggttgccagggttttggggatgatggctcgaact
cattcggggttgacggatggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgatggaaaagataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttaattgatgttcttaaagagctgaatcctagcctggacttcaaagtagtaacctacgaa
ctggaccacccaggatttcagattcgtgacagcaagggcctccatattgtagtgtttggc
attcagagagggctgggcatggaagtttttccagttaacgccatatacagaccttggaag
catgcagagggccagctctcctttattcaacattccctcataaaccctgacatcttctgt
tttgctgactacccttgtcatactgttgccacagacatcctgaaagcaccaccagaggac
gacaatcgagaaatcgctacatggaagagcctggatttgattgaatctctgttacgattg
gcagaagtgggacagtacgagcaggttaagcagctcttcagttttcctatcaagcattgc
ccagatatgttggtattggccttattgcagatcaacacgtcctggcataccttgcgccat
gaactcatctccacgctcatgccaattttccttggcaaccatcccaactctgccatcatt
ttgcactatgcatggcacggacagggtcagtctccttcaattcgtcagcttatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggcaaaattgtcacgtatt
cttgatgtggcacaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcctgtatgactttctta
aagagaagatgcccatctatcctgggtggccttgctccagaaaaagatcagcccaaaagc
gcacagcttcctccagaaaccttggcaactatgttggcatgtctgcaagcttgtgctggg
agtgtttctcaggagctgtcagagaccatcctcaccatggtagctaactgcagtaatgtc
atgaacaaggctagacagccacctcctggagtcatgccaaaaggacgcccgcccagtgct
agcagcttggatgccatctctcctgtacagatcgactcgcttgcaggaatggcatctctt
agtttaggtggctcagctgctcctcatacccagagcatgcaaggcttccctccaaacttg
ggctctgcgttcagtactcctcagtcaccagcaaaagcgttcccccctctttccacccaa
aaccagacaacaggtttcagtggcatcggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaaccggagccctgggccttcctgcagtcaac
aacgacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacgttccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaaccagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatttacaaccatccacca
catccaaccatgtctgtagatgaggtcttggaaatgctgcagaggtttaaggactccaac
atcaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaataccgt
ttctttccccagtacccagataaagagctgcacataacagcctgcctcttcggtgggata
atagagaaaggactggttacttacatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcatttacaggagtacatagagtatggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaagttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccattacaatcacccgaccaactggagtc
agcttcaagaaagatgtgccgccttccattaatactaccaacattgatacgctgttagta
gcaacagatcaaaccgagagaattgtggaacctccagagaatgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacagaaggttgaagaattgaaggaa
acggtgaaagaagagttcatgccttgggtatcacagtatcttgtgatgaagagagtcagt
attgagcctaattttcacagcttatattcaaacttccttgatacacttaagaatccagag
tttaataaaatggttctgaatgaaacctacagaaacatcaaggtgctactgacatcggat
aaagctgcagccaacttctcagaccgttccttgttaaagaaccttggtcactggctggga
atgattacgctggctaaaaataagcccatcttgcacacggatttggatgtgaaatcgcta
ctactggaagcgtatgttaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaggaattg
ctttacgtagtgccatttgttgccaaagtcttagaatccagtgtcaggagtgtggtcttc
aggcctccaaacccatggacaatggccattatgaacgttttagctgagctacatcaagaa
catgatctaaaattgaatctgaagtttgagattgaggtgctctgcaagaatcttgcacta
gacatcaatgagctgaaacctggaagtcttctgaaagataaggaccgtctgaaaaacctg
gatgagcagctgtctgctccaaagaaggatgtgaagcagccagaagagctaccgcccatc
acaactactactgcttctacaactccagctaccagcaccacttgtacagccacggttcct
ccacagccccagtacagttatcacgacatcaatgtctattctttaggagggttggctcca
cacattaccttaaatccaacaattccgctgtttcaagctcacccacagctgaagcagtgt
gtgcggcaggcgatagaacgagcagtgcaagagctcgtccatccggtggtcgatcggtcc
attaagatcgccatgactacttgtgagcagatagtcaggaaggacttcgcactggattcg
gaggagtcacgaatgcgtgtggccgcacaccatatgatgaggaacctgactgctgggatg
gccatgattacctgcagggaacctttgctgatgagcatagctaccaacttgaaaaatagt
tttgctactgcactgagggcagcctccccacaacagagggacatgatggagcaggcagct
gcccagttagcgcaggataactgtgagctcgcatgctgctttatccagaagacagctgtg
gaaaaggcaggccccgagatggacaagaggcttgcaactgaatttgagctcagaaaacat
gctagacaagagggtcgtcgatactgtgatcctgttgtgttaacttaccaggctgagcgg
atgccagaacagatcaggttaaaggttggaggtgtggacccaaaacagctggctgtttat
gaagagtttgcacgcaatgtccctggcttcttgcctaccaatgacttaactcagcctaca
ggattcttggctcagcctatgaagcaagcttgggctacagatgacgtagcgcaaatctac
gacaaatgtatgacagaactggaacagcacctgcagtccattccacacaccctggccatg
aatcctcaagctcaagcgttgcgcagcctcttggaggctgtggtggtggctcgtaactcc
cgtgatgctattgctgcacttggactgctgcagaaggctgtagagggcttgctggatgcc
accagtggggcagatgctgacctcctgcttcgctaccgtgagtgtcatctgctcgtgctg
aaggctctgcaggacggccgtgcatatggatctccgtggtgtaacaaacaaattactagg
tgcctgattgaatgcagagatgagtacaagtacaacgtggaagctgtggagctcctcatc
cgcaatcaccttgttaacatgcagcagtatgaccttcacttggctcagtcaatggagaat
ggcttgaactacatggctgtggcatttgccatgcagttggtaaagatcctgttggtggat
gagagaagtgtcgcccacgtaacggaggcagatctgtttcacacgattgagacactcatg
aggattaatgctcattccagaggaaacgccccggaaggattaccccagctgatggaagtg
gtccgatcaaactatgaagcaatgatcgaccgtgctcacggaggtcccaatttcatgatg
cattcaggaatttcccaagcctctgagtatgatgatcctccaggtctgagggagaaggca
gaatacctgctgagggagtgggtgaacctctaccattcagctgcagcgggccgtgacagt
accaaagcattctctgcgtttgttggacagatgcaccagcaaggaatcctgaaaacagat
gacctgatcacccgctttttccgtctttgcaccgaaatgtgtgttgaaatcagctatcgt
gcccaggctgagcaacagcataatcctgctgccaaccccaccatgattcgagccaagtgc
taccacaatctggatgcctttgtacgacttattgcactgctagtgaagcactctggggag
gcaaccaacaccgttacaaagatcaacctcctgaataaggttctcggtatcgtggtggga
gttcttctgcaagaccatgatgttcggcagagtgagtttcagcaacttccttaccatcgc
attttcatcatgttgctgttggaattaaatgctcctgagcatgtgctggagaccatcaac
ttccagacactcacagctttctgtaacacatttcacatcctgaggcctacaaaagctcca
ggttttgtttatgcctggctggaactgatctcccatcggatatttattgcaagaatgctg
gcacatacaccacagcagaagggttggcctatgtatgcccagttattgatcgatcttttc
aagtacttggctcctttccttagaaatgtggaactcaccaaacctatgcaaattctttac
aagggcactctgcgtgtgctgctggtcttgttgcatgatttcccagaatttctttgtgac
tatcactatgggttctgtgatgtgatcccacctaactgtattcagctaaggaatctgatc
ctgagtgccttcccacggaacatgaggcttccagaccctttcacccctaatctaaaggtg
gacatgttaagtgagattaatattgctccacgaatactcacaaatttcactggagtgatg
ccacctcagttcaagaaagacttggattcctatctcaaaacccgttctccagtcactttt
ttgtctgacttgcgcagcaacctccaagtatcaaacgaacctggcaaccgctacaacatc
cagctgattaatgcactggtgctctacgtaggtactcaagctattgcgcacattcacaac
aaaggcagcaccccctctatgagcaccattacccactcagctcacatggacatcttccag
aatttggcagtagacctggacactgaaggccggtaccttttcttgaacgcaattgccaat
cagctgcgatatcccaacagtcacacccactacttcagctgcaccatgctgtacctgttt
gcagaggccaacactgaggctatccaggagcagatcaccagggttctcttggaacgactg
attgtaaataggcctcatccctggggtctccttattactttcattgagctgataaaaaat
ccagcgtttaagttctggaaccatgagtttgttcactgcgctccagaaattgagaagttg
ttccagtcggttgcacagtgctgcatggggcagaagcaggcccagcaagtaatggaaggg
actggtgccagttag
DBGET
integrated database retrieval system
