Phaethon lepturus (White-tailed tropicbird): 104620515
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Entry
104620515 CDS
T08325
Name
(RefSeq) collagen alpha-3(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet04510
Focal adhesion
plet04512
ECM-receptor interaction
plet04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104620515
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104620515
09142 Cell motility
04820 Cytoskeleton in muscle cells
104620515
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
plet00535
]
104620515
Proteoglycans [BR:
plet00535
]
Extracellular matrix (ECM) proteoglycans
Others
104620515
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
104620515
NCBI-ProteinID:
XP_010285062
LinkDB
All DBs
Position
Unknown
AA seq
400 aa
AA seq
DB search
MAGFSALGLLFLCQLLATASAQRVGPQGPPGPRGPPGPSGKDGIDGEPGPPGLPGPPGPK
GAPGKPGGAGEAGLPGLPGVDGLTGTDGPPGPNGPPGDRGALGPAGPPGPAGKGLPGPPG
PPGPSGLPGGNGFRGPPGPFGLPGFPGPPGPPGPPGLPGTLPDGGGDLQCPALCPPGPPG
PPGMPGFKGHTGHKGEPGEIGKEGEKGSPGPPGPPGIPGSVGLQGPRGLRGLPGPMGPAG
DRGDIGFRGPPGIPGPPGKAGEQGNKGPQGFRGPKGDTGRPGPKGNPGARGLIGEPGMPG
KDGRDGAPGLDGEKGDAAHVGAPGEKGPNGLPGLPGRAGTKGSKGEPGSPGEMGEAGPSG
EPGIPVRILSPYRELCWERVVNQAVKLTLPCRFPAQIKLS
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggctggattctccgctcttgggcttctcttcctatgtcagctgttagccacagcatcg
gctcagagagtaggaccacaaggccctcctggaccacgaggaccccctggaccatctggc
aaggacggcatagatggagagccaggtcctcctggtttgccaggcccaccagggccaaaa
ggtgctccagggaagcctggaggagctggtgaagctggattgcctggcttgcctggagtg
gatggtttaacaggaaccgatggcccacctggcccaaacgggcctccaggagaccgtggt
gcattaggacctgccgggccacctggacctgccggcaaaggactcccaggacctcccggc
cctccaggacccagtgggctcccaggtggaaatggatttcggggtcctcctggacctttt
ggtctgccaggattcccagggcctcctggaccacctggacctcccggtcttccaggcacc
cttcccgatggcggtggggaccttcagtgcccagctctgtgcccaccgggtcctccaggt
cccccaggaatgccagggttcaagggacacactggtcacaaaggagaacctggtgaaata
ggaaaagaaggagaaaagggcagccctggccctcccggtcctccaggcattcccggcagc
gttggcctgcagggcccaagaggactaagaggccttcctggtccaatgggtccagctggt
gacagaggtgacatcggtttcagaggaccacctgggatcccaggacctccaggaaaagct
ggagaacaaggaaacaaaggacctcaaggattcagggggcccaaaggtgatactggtaga
cctggaccaaaaggaaacccaggagctcgtggactcataggagaacctggcatgcctggc
aaggatggacgggacggagctcctggactcgatggtgagaagggtgatgcagctcacgtg
ggtgctcctggagagaaggggccaaacggactgcctggactgcctggaagagcaggtact
aaaggctcaaagggtgaaccaggcagtcctggagagatgggagaggcaggtccctctgga
gagccaggcatccctgtacgtatcctttccccgtaccgtgagctctgctgggagcgtgtt
gtaaaccaagctgtgaagctgacgctcccgtgccgcttccctgcacaaataaagctttcc
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