Paucimonas lemoignei: NCTC10937_00240
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Entry
NCTC10937_00240 CDS
T05492
Symbol
recQ_1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
plg
Paucimonas lemoignei
Pathway
plg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10937_00240 (recQ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plg03019
]
NCTC10937_00240 (recQ_1)
03400 DNA repair and recombination proteins [BR:
plg03400
]
NCTC10937_00240 (recQ_1)
Enzymes [BR:
plg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC10937_00240 (recQ_1)
Messenger RNA biogenesis [BR:
plg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC10937_00240 (recQ_1)
DNA repair and recombination proteins [BR:
plg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCTC10937_00240 (recQ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
SQF93768
LinkDB
All DBs
Position
1:254939..256882
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AA seq
647 aa
AA seq
DB search
MHQRLEQVFGYSQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTVVVS
PLLALMQDQLAFLQRHGISAASIDSAQSRDDAAQVMARARSGELKILMISVERLKNERFR
HFISQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQREFNIPQALLLTATATPQVIADM
QAKFAIEPQDVVTTGFYRANLNLWVEPVAGRDKRRRLVEWLGAKVGQPTIVYVTLQKTAE
YVAAHLEQHGMQATAYHAGLPHDKREAIQRRFMGGELNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGAPSDCLVLANRDSLNVLENFVYGDTPELSGIRHVLEELL
DAGPQGQWEFLLGPLADQSNIRQLPLKTLLVQLELRSIIAPRYAYFAEYRFKFLLEPSAL
VQRFEGERRQFVEALVETSTRARTWATVDFDAMFQRYQAERGRVVKALDYFQEKGWIELE
TRQMTEVYSLLNSDFDAQALSLELHEYFSEHETTEVERIHAMLDLFASEQCLGYRLAEYF
GDHQAPQQCGHCSVCHGQVAYLPEPPQLAPLQAQSFEQLCGGFISKHQEYKGAEPGAECL
TRFLCGISVPLFTKLKARGIPGFAQLEDYPYAAVRDWVRSNQNAVSQ
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgcatcagcgtttagagcaggttttcgggtattcgcagtttcgtccggggcaagaggcg
gcgatcagcgctgtgctcgccgggcgatctgcggcggcaatttttccaaccgggtcgggc
aagtcgttgtgctatcaactgcctgcgctgatgttgccgcacctgacagtggtcgtgtcc
ccgctgttggccctgatgcaggaccaactggcgtttctgcagcgtcatggtatttcagcg
gccagcattgattcggcacagagtcgcgacgacgccgctcaggtcatggctcgggcgcgt
tccggcgagttgaagattctgatgatctcggttgaacgcttgaaaaacgagcgcttccgg
cacttcatttcccaggtgccgatttccctgctggtggtggacgaagcgcactgtatttct
gagtggggccacaatttcaggcctgattacctgaagcttcccgactaccagcgcgaattc
aacatcccccaggcgctgctgctgacggccacggccacgccgcaagtgatcgccgatatg
caggccaagttcgccattgagcctcaggacgtggtgaccaccggtttttaccgcgccaac
ctcaacctgtgggtcgagccggtggccggacgcgacaagcgtcggcggctggtggaatgg
ctgggcgccaaggtgggccagccgaccatcgtgtatgtgacgctgcagaaaaccgccgag
tatgtcgccgctcacctggagcagcacggtatgcaggccaccgcgtatcacgcaggcttg
ccccacgataagcgtgaagcgatccagcgtcggttcatgggcggcgagttgaattgcatc
gtcgcgaccattgcttttggcatgggcatcgacaagagcgacatccgcaatgtggtgcac
ttcgatttgcccaaatccatcgaaaactacagccaggaaatcggccgcgccgggcgtgat
ggcgcgccgtccgattgcctggtgctggccaatcgcgacagcctcaacgtgctggaaaac
ttcgtgtatggcgatacgccggagctgagcggtattcgccatgtgcttgaagagctgctg
gatgccgggccgcaagggcagtgggaatttttgctcgggccgctggccgaccagagcaat
attcgccagctgccgctcaagacgctgctggtccagctggaacttcgtagtattatcgct
ccacgttacgcctacttcgctgaatatcgcttcaagtttctgttggagccaagtgcactt
gtgcaacgcttcgagggcgagcgtcggcagttcgttgaagcattggtggaaacttcaacg
cgcgcacgcacctgggcgacggtggatttcgacgccatgtttcagcgctaccaggccgag
cgcggtcgggtggtgaaggcgctggactacttccaggaaaagggttggatcgagctggaa
accaggcagatgaccgaggtgtacagcctgctgaacagcgattttgatgctcaagcgctg
agcctggagctgcatgaatatttcagtgagcatgagaccactgaagtcgagcgtatccac
gcgatgctggatctgttcgccagcgagcaatgcctgggctaccggttggctgaatacttt
ggcgatcaccaggcgccgcaacagtgcggccattgttcggtgtgtcacgggcaggttgcg
tatctgcctgagcctccacaattggcgccgttgcaggcgcagagctttgagcaattgtgc
ggcggttttatcagcaagcatcaggaatacaagggggctgagcccggtgcggaatgcctg
acgcgttttctgtgcggcatcagcgtgccgttgttcaccaagctcaaggcgcgggggatt
cccggttttgcgcagctggaggattatccctacgcagcggtgagggattgggtgcgctcc
aatcaaaacgccgtgtcccagtag
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