Paucimonas lemoignei: NCTC10937_04875
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Entry
NCTC10937_04875 CDS
T05492
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
plg
Paucimonas lemoignei
Pathway
plg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC10937_04875 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plg03021
]
NCTC10937_04875 (rpoB)
03400 DNA repair and recombination proteins [BR:
plg03400
]
NCTC10937_04875 (rpoB)
Enzymes [BR:
plg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC10937_04875 (rpoB)
Transcription machinery [BR:
plg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC10937_04875 (rpoB)
DNA repair and recombination proteins [BR:
plg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC10937_04875 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
SQG00678
LinkDB
All DBs
Position
1:complement(5471763..5475836)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVQGEN
LSLELVPQRLRGEIAVLDILDDKGKVIVEQGRRITARHINQLEKAGIKQLEVPLDYVLGR
TTAKVIVHPATGEIIAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASAAMNDKKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVERSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGRKVEGGAGLKKGQDITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKVADLRKFLTEIYNEIGGRQEKLEDFSDKEILDLAKNLRNGVPMATP
VFDGAKEVEIKAMLKLADMPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtaatggatgtgccgtatctcctggccatccagctggattcgtatcgcgaattcctgcaa
gcgggagcgaccaaagatcagttccgcgacgtcggtctgcatgcagccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtatgtaggttatcgcttgggc
gaaccggcatttgatgtcaaagagtgcgtgctgcgcggtgtgacttacgctgtacctctg
cgagtaaaagtccgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gttatcaacggtaccgagcgtgttatcgtttcccagctgcaccgttccccgggtgtgttc
ttcgaccacgaccgcggcaagacgcacagctccggcaagctgctttactccgctcgcatc
attccttaccgtggttcgtggctggacttcgagttcgatccaaaggactgtgtattcgtc
cgtatcgaccgtcgccgcaagctgcctgcatcggtattgttgcgcgcgctgggctacaca
accgaacaggttctggacgctttctacaccaccaacgtattccatgttcaaggtgagaac
ctgagcctggagctggtgcctcagcgcctgcgcggcgaaattgctgtcctggatattctg
gacgacaagggcaaggttattgtcgagcagggccgtcgtatcaccgctcgccacatcaac
cagctggaaaaagccggtatcaagcagttggaagtacctctggactacgtcctgggtcgc
accactgccaaggtcatcgtgcatccagcgaccggcgaaatcattgctgagtgcaatacc
gagctgaacactgagatcctggccaagatcgccaaggctcaggtcgttcgcatcgaaacg
ttgtacaccaacgatatcgactgtggtccgttcgtatccgacacgctgaagatcgactcc
accagcaatcagctggaagcgctggtcgagatctaccgcatgatgcgtccaggcgagccg
cctaccaaggacgcagcagagaccttgttcaacaacctgttcttcagcccagagcgctac
gacctctccgctgttggccggatgaagttcaaccgtcgtatcggtcgcaccgaaatcgaa
gggtcaggcgtactgtgcaaagaagatatcgtcgccgttctcaagacgctggttgatatc
cgcaacggtaaaggcatcgtcgacgacatcgaccacttgggtaaccgccgtgttcgctgt
gttggcgaaatggctgaaaaccagttccgtgtcggcctggtgcgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggtctgatgcctcaggacctgatcaacgcc
aagccagttgctgctgcggtcaaagagttcttcggttctagccagctttctcagttcatg
gaccagaacaacccgctgtccgagatcactcacaagcgtcgtgtttctgcactcggccct
ggtggtttgactcgtgagcgtgctggctttgaagttcgtgacgtacacccgactcactac
ggtcgtgtatgcccgatcgaaacgccggaaggtccgaacattggtctgatcaactcgttg
gctgcctatgcgcgtaccaaccagtacggcttccttgagagcccgtaccgtgttgtaaaa
gacgcattggtcaccgacgaaatcgtattcctgtcggctatcgaagaagcggaccacgtc
atcgcccaggcttctgcggcaatgaacgacaagaaggtcctgatcgacgagctggtagct
gttcgtcacttgaacgagttcaccgtcaaggctccggaagatgtgacgctgatggacgtt
tcgccgaagcaggttgtttcggttgcggcctcgcttatcccgttccttgagcacgatgac
gccaaccgagcgttgatgggttcgaacatgcagcgtcaggctgtaccaacactgcgtgct
gacaagccgctggtaggtactggcatggagcgcaacgttgctcgcgactccggcgtttgc
gtcgtggcgcgtcgtggtggcgttatcgactccgttgatgctagccgtatcgtggttcgt
gttgcagatgatgaagtagaaaccggtgaagctggtgtcgacatctacaacctgaccaag
tacacccgctccaaccagaacacttgcatcaaccagcgtccgctggtgagcaaaggtgat
cgggttgagcgtagcgacatcatggctgacggcccgtccaccgatatgggtgagctggct
ttgggtcagaacatgcgcatcgccttcatggcatggaacggcttcaacttcgaagactcc
atctgcctatccgagcgtgttgttcaggaagaccgtttcaccacgatccacattcaggaa
ctgacctgtgtggcacgtgataccaagcttgggcctgaagagatcactgcagacatccct
aacgtgggtgaagctgcactgaacaaactggacgaagccggtattgtttacgttggtgcc
gaagttggcgctggcgacattctggttggcaaggtcactccgaaaggcgagacccaactg
actccggaagaaaaactgttgcgcgctatcttcggtgagaaggccagcgacgttaaagac
acctccctgcgcgtacctaccggtaccaaaggtactgtcatcgacgttcaggtcttcact
cgtgatggcgttgagcgtgatgctcgtgcgctgtccatcgagaagactcagctcgacgag
atccgcaaggacttgaacgaagagttccgtatcgttgaaggcgcgaccttcgaacgtctg
cgttccgctctggttggccgcaaggtcgaaggcggcgctggtctgaagaaaggtcaggac
atcaccgacgaagttctcgacggtcttgagcacggccagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaagctcaggcttacatcgttgatcgtcgtcgt
ctgttggacgacaagttcgaagacaagaaacgcaaactgcagcaaggcgatgacctggct
ccaggcgttctgaagatcgtcaaggtttacctggcaatccgtcgccgcattcagccgggc
gacaagatggccggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtggatatcgttctcaacccgctgggcgta
ccttcgcgtatgaacgttggtcagattcttgaaactcacctgggcctggcggccaaaggt
ttgggcgagaagatcaaccgcatgcttgaagagcagcgtaaagttgctgacctgcgtaag
ttcctgaccgagatctataacgaaatcggcggccgccaagagaaactggaagactttagc
gataaagaaatcctggatctggcgaagaacctgcgtaacggcgtacctatggctaccccg
gtgttcgacggtgccaaggaagttgaaatcaaggcaatgctcaagctggcagatatgcca
gagagcggccagatgcagctgttcgatggtcgtaccggcaacaagttcgagcgtccggtt
accgttggctacatgtacatgctgaagctgaaccacttggtggacgacaagatgcacgcg
cgttccactggttcttacagcctggttacccagcagccgctgggtggtaaggctcagttc
ggtggtcagcgtttcggggagatggaggtgtgggcgctggaagcatacggcgcggcctac
actctgcaagaaatgctcactgtgaagtcggacgatgtgaacggccgtaccaagatgtac
aaaaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtctttcaacgtg
ttgatcaaagaaattcgttcgctcggcatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
