Planctomyces sp. SH-PL62: VT85_00340
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Entry
VT85_00340 CDS
T04401
Symbol
rpoA_1
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
plh
Planctomyces sp. SH-PL62
Pathway
plh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VT85_00340 (rpoA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plh03021
]
VT85_00340 (rpoA_1)
03400 DNA repair and recombination proteins [BR:
plh03400
]
VT85_00340 (rpoA_1)
Enzymes [BR:
plh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VT85_00340 (rpoA_1)
Transcription machinery [BR:
plh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VT85_00340 (rpoA_1)
DNA repair and recombination proteins [BR:
plh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VT85_00340 (rpoA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
TPR_2
TPR_8
TPR_1
TPR_12
TPR_19
TPR_7
TPR_16
TPR_MalT
ARM_TT21_C
TPR_CcmH_CycH
TPR_Slam
TPR_14
HHH_8
TPR_11
HEAT_Nup120
SNAP
Motif
Other DBs
NCBI-ProteinID:
AMV35858
LinkDB
All DBs
Position
complement(86224..87615)
Genome browser
AA seq
463 aa
AA seq
DB search
MTEMMTTDVRAIMDRTPFDVSAVADLREVLNRDPSRYRTLRDAVATIRDREKQQPSGSQE
TNLRLGVGEVLLGRYAAGLDNLKRAGDVGMALYFQGLAAENLQRYQEAADAFAKSAKLGY
DAKNSELRRAGALRRLGQADQSNGKFEQAAGKFQEAKTILGGLETSVGSSAEYHFQQGAV
LAAEGDLELAAAELEKALALDRDHNGALFELAYINDLYGNDDAAVDFYKRCTERPPVPLA
AWINLGVLYEDEMKFREAEQCYRHVLDYDPNHPRARLFFKDCQASKGMYYDEEAEKGYTV
LKQLLEIPVTDFELSVRSRNCLRKMNIRTLGDLTRTTEAALLASKNFGETSLAEIKEMMR
SKGVRLGMALEGAERGGPGGNDHRAEPAQEVSPEVQAMLSKPISELSLSVRARKCMSKLN
LQTVGDLTKRSGDDLLECKNFGVTSLNEVRDKLSALGLKLKND
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgactgagatgatgaccacggacgtccgcgcgatcatggatcgcacgcccttcgatgtt
tcggccgtcgccgatctgcgcgaggtgctcaaccgcgatccgtcccgctatcggaccctc
cgcgacgccgtggcgacgatccgcgaccgcgagaagcagcagcccagcggcagccaggag
accaacctccgcctgggcgtcggcgaggtcctgctgggccgatacgccgccggcctggac
aacctgaagcgcgccggcgacgtcgggatggccctgtatttccagggcctggccgcggag
aacctccagcgttaccaggaggcggccgacgccttcgcgaagtcggccaagctcggctac
gacgccaagaactcggagcttcgccgcgccggcgccctgcgtcggctgggccaggccgac
cagtccaacggcaagttcgagcaggccgccgggaagttccaggaggccaagacgatcctc
ggggggctggagacgtcggtcggctcgtcggccgagtaccacttccagcagggcgcggtg
ctcgccgccgaaggggacctggagctggccgccgccgagctggagaaggccctggccctc
gaccgcgaccacaacggcgcgctcttcgagctggcctacatcaacgacctctacggcaac
gacgacgccgccgtcgacttctacaagcggtgcaccgaacggcccccggtgccgctcgcc
gcctggatcaacctgggcgtgctgtacgaggacgagatgaagttccgggaggccgagcag
tgctaccggcacgtgctcgactacgaccccaaccacccccgcgcccggctgttcttcaag
gactgccaggccagcaaggggatgtactacgacgaggaagccgagaagggctacaccgtc
ctcaagcagctgctggagatcccggtcaccgacttcgagctgtcggtgcggagccgcaac
tgcctccgcaagatgaacatccggacgctgggcgacctcacccggacgaccgaggcggcg
ctgctggcctccaagaacttcggcgagacctcgctggccgagatcaaggagatgatgcgc
tccaagggggtccggctgggcatggcgctggaaggcgccgagcgcggcggccccggcggg
aacgaccaccgcgccgagccggcgcaggaggtctcgcccgaggtccaggccatgctgagc
aagccgatcagcgagctgagcctgtcggtgcgggcgcgcaagtgcatgagcaagctgaac
ttgcagaccgtgggcgacctgaccaagcggtcgggggacgacctgctggagtgcaagaac
ttcggcgtcacctcgctcaacgaggtccgcgacaagctctcggccctcggcctgaaactc
aagaacgactga
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