Candidatus Planktophila limnetica: PHILAsVB114_03885
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Entry
PHILAsVB114_03885 CDS
T05067
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
plim
Candidatus Planktophila limnetica
Pathway
plim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PHILAsVB114_03885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plim03400
]
PHILAsVB114_03885
DNA repair and recombination proteins [BR:
plim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PHILAsVB114_03885
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PHILAsVB114_03885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
DEAD
UVR
AAA_22
AAA_5
AAA_16
AAA_19
HEM4
AAA_30
P-loop_SecA
SWI2_SNF2
DUF87
HAMP
Helicase_RecD
AAA_7
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ASY27784
UniProt:
A0A249LFR8
LinkDB
All DBs
Position
complement(727205..729286)
Genome browser
AA seq
693 aa
AA seq
DB search
MRPITDLQRRVEPFQVISDYIPAGDQPAAIEEIVKRINSGVQDVVLLGATGTGKSATTAW
MIEKLQRPTLVLAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEK
DSSVNDEVERLRHSATNSLLTRRDVIVVATVSCIYGLGTPQEYVDRMIKLRVGDEIERNV
LLRRFVDVQYKRNDMAFERGTFRVRGDTIEIIPMYEELALRIEMFGDEIERITTLNPLTG
EIVREEEEMYVFPATHYAAGPETMKRAMGEITDELQIQLNLFEKQGKLLEAQRLRMRTTF
DLEMMEQLGFCSGIENYSRHLDGRNPGSAPNCLLDYFPEDFLVVIDESHVTVPQIGAMFE
GDASRKRTLVEHGFRLPSALDNRPLKWPEFLDRVGQKVYLSATPGPYELGKVENDVVEQV
IRPTGLVDPQIIVKPIKGQIDDLLAEIKIRTEKNERVLVTTLTKKMSEDLTEYLQEKGIR
VEYLHSEVDTLRRVELLRELRSGQFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSA
TSLIQTIGRAARNVSGEVHMYADNITKSMAKAIDETNRRRAKQVAYNLERGVDPQPLRKK
IADITDLINRESDDTDELLASGRKSRSAGAPPIGLRSKNAGSLPRQELVALIESLTDQMR
SAAAELSFELAARLRDEIRDLKKELRAMQEAGH
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccgattactgacctacaaagacgggttgaacctttccaagtaatcagtgattac
ataccagcaggtgatcaaccggctgccattgaagaaatcgtcaagcgcattaactctggc
gtccaggacgttgttttactcggtgcaaccggaactggaaagtctgcaacaacagcgtgg
atgatcgaaaagctacaacgtccaacacttgtactggcccctaacaaaactttagcagcg
cagctggcaaatgaatttagagaacttttgcctaacaacgctgttgagtatttcgtttct
tattatgattattaccaaccagaagcctatgttccgcaaacagatactttcattgaaaaa
gattcaagtgtgaatgacgaagttgagcgcttgcgacactctgccacgaattcacttctg
acaagacgagatgtgatcgtggtggcaaccgtttcctgtatctacggactcggaacaccc
caagagtatgtggatcgcatgatcaaactgcgggttggagatgaaatcgagcgaaatgta
ctccttcgtcgattcgtagatgttcaatacaagcgcaatgacatggcatttgaacgcgga
acatttcgagttcgcggagacacgattgaaatcattcctatgtatgaagaactggctctt
cgcatcgaaatgtttggcgatgagatcgaacgcatcacaaccttgaacccgcttacaggt
gaaattgttcgagaagaagaagagatgtatgtctttcctgcgactcactatgccgccggc
ccagaaacaatgaagcgggcgatgggggagatcacagatgaattgcagatccagttaaat
ctctttgaaaagcaaggcaaacttttagaagctcaaagacttcgcatgcgcacaactttt
gatttagagatgatggagcaattgggtttctgctctggaatcgaaaactattctcgccac
ttagatggtcgcaatccaggttcggcgcctaattgtttactagattattttccagaggat
tttttggtagttatagatgaaagccacgtaacggtcccacaaatcggtgccatgtttgaa
ggtgatgcatcgcgaaagcgcacactggttgaacatggtttccgtcttcctagcgcctta
gataatcgacctcttaaatggccagaatttctcgatcgtgttgggcagaaggtttatttg
tcggcgactcctggaccatatgaattaggcaaagttgaaaacgatgttgtggaacaagtt
attcgtccgaccggtttagttgatcctcaaatcattgttaagcccataaaggggcagatt
gatgacttgctagccgaaatcaagattcgaaccgagaagaatgaacgcgttctagtgaca
actttgactaagaagatgtctgaagatctcactgagtacctgcaagaaaaaggaatcaga
gttgagtacttgcactcagaagttgatactttgcgcagagttgaattgttgcgtgaacta
cgtagcggacaatttgatgtgttaatcggaattaacctattgcgagaaggcttggatttg
cctgaagtttccttggttgcaattctcgatgctgataaagaaggatttttgcgatctgca
acttcactgattcaaactattggtcgtgcggcccgaaatgtctcaggtgaagttcacatg
tatgcagataacatcaccaagtccatggcaaaagcaatcgatgaaaccaatcgacgccga
gcaaaacaagttgcctataacctcgaacgtggtgttgacccgcagccattacgtaagaaa
attgcggacattactgatctgattaatcgagaaagtgatgacaccgatgaactacttgct
tcgggtcgcaaatctaggtcagcaggtgcaccgccaattggtttgcgcagcaagaacgcg
ggatctttgccgcgccaagagttagtcgcattgatagagtcgctcactgatcagatgaga
agcgctgcggcagaactatcctttgagttggcggcccgattgcgcgatgaaatcagagat
cttaaaaaagaacttagagccatgcaggaagcggggcattaa
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