Perognathus longimembris pacificus (Pacific pocket mouse): 125338699
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Entry
125338699 CDS
T08928
Symbol
Smg9
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9
KO
K18735
protein SMG9
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125338699 (Smg9)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125338699 (Smg9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
ABC_tran
DUF6079_1st
URGCP_GTPase
Motif
Other DBs
NCBI-GeneID:
125338699
NCBI-ProteinID:
XP_048185601
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Position
20:complement(20276035..20288427)
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AA seq
519 aa
AA seq
DB search
MSESGHSQPGLYGMERRRRWKEPGSIGPQNLSGPGGRERDYLAPWERERRDGSEDSSTAI
MQKTPIILSKPPAERSKQPAPPTAPAASPAPAPLEKPIVLMKAREEGKGPPATGAPTPEG
AAPPPAAAPAPPKGEKEGQRPTQPVYQIQNRGMGTAAPTAMDPVVGQAKLLPPERMKHSI
KLVDDQMNWCDSAIEYLLDHTDMLVVGVLGLQGTGKSMVMSLLSGNTPEEDQRAYVFRAQ
SAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVE
MQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSSSAGSEEGT
EYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFPGLPPDF
LDSEVNLFLVPFMDSEAESENPPRAGPGSSPLFSLLPGYRGHPSFQSLVSKLRSQVMSMA
RPQLSHTILTEKNWFHYAARIWDGVKKSSALAEYSRLLA
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagtcggggcacagtcagcctgggctctacgggatggagcggcggcggcggtgg
aaggaaccgggctccattggcccccagaatctctctgggcctggaggtcgggagagagat
taccttgcaccgtgggaaagagagaggcgggatggcagcgaggactccagcacagccatc
atgcagaagacccccatcatcctgtccaagcctccagctgagcggtccaagcagccagcc
ccacccacagcccccgccgcgtcccccgctccggcccccctggagaagcccatcgtgctc
atgaaggcccgggaggagggcaaggggccccctgccacgggtgcccccacccccgagggc
gccgccccgccccccgccgcagccccagctccacccaagggagagaaggaggggcagagg
cccacgcagcccgtgtaccagatccagaaccggggcatgggcacggccgcccccaccgcc
atggaccccgtcgtgggccaggccaaactactgcccccagagcgcatgaagcacagcatc
aagctggtggatgaccagatgaactggtgtgacagcgccatcgagtacctgctggatcac
acagacatgctagtggtcggggtcctgggcctccaggggacaggcaagtccatggtgatg
tccctgttgtcaggcaacaccccagaggaagaccagagggcctatgtgttccgggcccag
agcgccgagatgaaggaacgaggcggcaaccagaccagtggcatcgacttcttcatcacg
caggagcggatcgtgttcctggacacacagcccatcctgagcccctccatcctggaccac
ctcatcaacaatgaccgcaagctgccccccgagtacaaccttccccacacctacgttgag
atgcagtccctgcagatcgccgctttcctcttcaccgtctgccacgtggtgatcgtagtc
caggactggttcacagacctcagtctgtacaggttcctgcaaacggcggagatggtgaag
ccctccaccccgtcccccagccatgagtccagcagctccgcgggctccgaggaaggcacc
gagtactacccacacctggtctttctgcagaacaaggctcgccgcgaggacttctgtccc
cggaagctgcgccagatgcacctgatgatcgaccagctcatggcccactcccacctgcgg
tacaaggggaccctgtccatgcttcagtgcaacgtcttcccggggctgccacccgacttc
ctggactccgaggtcaacctgttccttgtgcccttcatggacagcgaggcggagagtgag
aacccgcccagagcagggcccggttccagcccacttttctccctgctgcctgggtaccga
ggccacccgagtttccagtccttggtgagcaagctccggagccaggtgatgtccatggct
cggccacagctgtcccacaccatcctcaccgagaagaactggttccactacgccgcccgc
atctgggacggggtgaagaagtcctccgccctggcagagtacagccgcctgctggcctga
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