Perognathus longimembris pacificus (Pacific pocket mouse): 125358381
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Entry
125358381 CDS
T08928
Symbol
Cnot1
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125358381 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125358381 (Cnot1)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125358381 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125358381 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
125358381
NCBI-ProteinID:
XP_048211425
LinkDB
All DBs
Position
10:19570024..19657253
Genome browser
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFGFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEEXPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcacatgttgatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgattcaggagtgtgcgtcg
ctgattacaaagccaaattttatctcgacattgtcatatgccattgataatccattgcac
taccagaagagtttaaagcctgcacctcacttgtttgcccagctgagtaaagttctcaaa
ttaagcaaagtacaagaggtaatttttggccttgccctcttgaattcttccagctcagat
ctccgaggttttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcttac
atagacgcagacgtcagtggaaatcaagaaggtggcttccaagacatagcaatagaggtc
ctacacctcctcctctcccatctcctttttgggcagaagggagcctttggagttggacag
gaacagatagacgcttttcttaagactctgcgcagagattttccccaagaacgctgtcct
gtggtgcttgcaccacttttatatcctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggggtagctaaaaccatgatggagagctctttggctgatttcatgcaa
gaagtaggctacggtttttgtgcaagtattgaagaatgtcggaatataatcatgcagttc
ggtgttcgggaggtcacagctgcccaggttgccagggttttgggaatgatggctcgaact
cattcaggattaacagatggtattccgttacagagtatctctgctcctggcagtggaatc
tggagtgatggaaaagataaaagtgatggagcacaggcgcacacatggaacgtggaagtc
ttgattgatgttcttaaggaactgaacccgagtttgaatttcaaggaagtaacttacgaa
ctagaccatcctggatttcagattcgtgacagtaaaggacttcataatgtggtttatggc
attcagaggggtttgggtatggaagtgttccctgtagacttcatatatagaccttggaaa
catgcagaaggccagctctcctttattcaacattccctcataaacccagagatcttctgt
ttcgctgactatccctgtcacactgttgctactgatattctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctctgcttaggctt
gcagaagttgggcagtatgaacaagtcaaacaactctttggctttcctatcaaacattgt
ccagacatgctggtattggccttactccaaatcaacacttcttggcacactctacgtcat
gaactcatctctactctgatgccaatattccttggaaatcatcctaactctgccattatt
ttgcactatgcatggcatgggcagggccagtctccatcaatacgccaacttatcatgcat
gcaatggcagaatggtacatgagaggagagcaatatgaccaggccaaattgtctagaata
cttgatgtggcccaagacttgaaggccttgtcaatgctgctaaatggcactccctttgcc
tttgttattgaccttgctgcacttgcttcacgtcgtgaatacctcaaacttgataaatgg
ctcacagataaaataagagagcatggggagccttttattcaagcatgcatgactttctta
aagagaagatgtccttctattttgggtggacttgctccagagaaagaccagcctaagagt
gctcaacttcctcctgaaactctggccacaatgttggcttgtctacaggcttgtgctggg
agtgtttctcaagagttgtcagagaccatcctcaccatggtagccaactgtagtaatgtt
atgaataaggccagacagccaccacctggagttatgccaaaaggacgacctcctagtgct
agtagcttagatgccatttctcctgttcagattgacccccttgctggaatggcatctctt
agtataggtggttcagctgctcctcacacccagagcatgcagggctttccgccaaatttg
ggttctgcattcagtacccctcaatcaccagcaaaagcatttccacctctttcaacccca
aatcagacaactgcattcagtggtattggaggcctttcatcacagcttccagtaggtggt
cttggcacaggcagcttgactggtataggaactggggctcttggacttcctgcagtgaat
aatgatcccttcgtacagagaaaattgggcacctctggactcaaccagcctacattccag
cagagtaagatgaaaccttcagatttatctcaggtgtggccagaggcaaatcagcacttt
agtaaagagatagatgatgaggcaaacagctatttccagcgaatatataaccatccacca
catccaaccatgtctgttgatgaagtactagaaatgctacagagatttaaagactcaact
ataaaaagggaacgagaagtatttaactgtatgctaaggaacttgtttgaagaatatcga
tttttcccccagtaccctgataaagagttacatataacagcttgcctgtttggtggcata
atagaaaaaggactggtcacttacatggcattgggtctggccctgagatatgtccttgaa
gccttacggaagccttttggatccaaaatgtattattttgggattgctgcactagataga
tttaaaaatagattgaaggactatcctcagtattgccagcacttggcatccatcagtcac
tttatgcagtttccacatcatttgcaggagtatatcgaatatggacaacagtctagagat
ccacctgtgaaaatgcaggggtctatcacaacccctggaagtattgcactggctcaggcc
caggctcaagcccaggttccagccaaagctcctcttgctggtcaggttaacactatggta
accacctcaaccaccaccactgttgctaaaacggttacagtcaccaggccaactggagtc
agctttaagaaagatgtgccaccttccatcaatactacaaatatagatacattgcttgtg
gccacagatcaaactgagagaattgtggagcccccagaaaatatccaggagaaaattgct
tttatcttcaataatctctcacagtcaaatatgacccagaaggttgaagaactaaaagaa
acagtgaaggaagaatttatgccttgggtttcacaatatctagttatgaagagagtcagt
attgagccaaactttcacagcctgtattcaaacttccttgacacactgaagaatcctgaa
tttaacaagatggttctgaatgagacctacagaaatatcaaagtgctcctgacctctgat
aaagctgcagcaaatttttcagatcgttctttgctgaagaacttggggcattggctggga
atgatcacattagctaaaaataaacccatcttgcatactgatttggacgtgaaatctttg
ctactagaggcttatgttaaaggacaacaagaattactgtatgtagtgccctttgttgcc
aaagtcttagaatccagcattcgtagtgtggtttttaggccaccaaacccctggacaatg
gcaattatgaatgtattagcagagctacaccaggaacatgatttaaagttaaacttgaag
tttgaaattgaggtgctctgcaagaaccttgcattagacatcaatgaactgaaacctgga
aacctattaaaagataaagatcgcctgaaaaatttagatgagcaactctctgctccaaag
aaagatgttaaacagccagaagaanctcctccaatcacaacaacaacaacttctacaaca
ccagctaccagtactacttgtacagccacggttccaccacagccacagtacagctaccat
gatatcaatgtctattcccttgcaggactggcaccacacattactctaaacccaacaatt
cccttgttccaggcccatccacagttgaaacagtgtgtacgccaagcaattgaaagggct
gtacaggaactggttcaccctgtggtggaccgatcaattaagatcgccatgactacttgt
gagcaaatagtcaggaaagattttgccctggattcggaggaatctcgaatgcgaatagca
gctcatcacatgatgcgtaacttgacagctgggatggctatgattacttgcagggagcct
ttgctgatgagcatatccacaaacctaaaaaacagttttgcctcagctcttcgtactgca
tccccacaacaaagggaaatgatggaccaagcagctgctcagttagctcaggacaattgt
gaattagcttgttgttttattcagaagactgctgtagagaaagcaggccctgagatggac
aagagattagcaactgaatttgagctgagaaaacatgctaggcaagaaggacgaagatac
tgtgatcctgttgtattaacatatcaagctgagcggatgccagagcagatcaggcttaaa
gttggtggtgtggacccaaagcagctggcagtttatgaagagtttgcacgaaatgtacct
ggctttttgcctacaaatgacctaagtcagcccacaggatttttagctcagcccatgaag
caagcttgggcaacagatgatgtagctcaaatttatgataagtgcattacagaactggag
cagcacttacatgccataccaccaactttggctatgaaccctcaagcccaggctctgcga
agtcttttggaggttgtagtgttatcacggaactctcgggatgccatagctgctcttggc
ttgctccagaaggctgttgagggcttattagatgccacaagtggtgctgatgctgacctg
ctgctgcgttaccgagagtgccacctcttggtactaaaagctctgcaggatggcagggca
tatggatctccatggtgcaacaaacagatcacaaggtgcctaattgaatgtcgagatgaa
tataaatataatgtggaggcagtggagttgttaatacgaaatcatttggttaacatgcaa
cagtatgaccttcacctagctcagtcaatggagaatggtctaaactacatggccgtggcg
tttgctatgcagttggtaaaaatcctgctggtggatgaaaggagtgttgctcatgttact
gaggcagatctgtttcacaccattgaaactctcatgaggattaatgctcattccagaggc
aatgctccagaaggattgccccagctgatggaagtagtacgatccaactatgaagcaatg
attgatcgtgctcatggaggccccaactttatgatgcattctgggatatctcaagcctca
gagtacgatgaccctccaggcttgagggagaaggcagagtatcttctgagagaatgggtg
aatctctaccactcagcagcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacagatgcatcagcaaggaatactgaagactgatgacctcataacaagattttttcgt
ttgtgcactgaaatgtgtgttgaaatcagttaccgtgctcaggctgagcagcagcacaat
cctgctgctaatcccaccatgatccgagccaagtgttaccacaatctagatgcctttgtg
cgacttattgcactgttagtgaagcactcaggggaggctaccaacactgtcacaaagatt
aatctgctgaacaaggtccttggtatagtagtgggagttctcctacaggatcatgatgtt
cgacaaagtgaatttcagcagcttccctaccatcgaatttttatcatgttgctcttggaa
ctcaatgcacctgagcatgtgttagaaactattaatttccaaacacttacagctttctgt
aatacattccacattttgaggcctaccaaagctcctggctttgtatatgcctggcttgaa
ctgatctcccatcggatatttattgcaagaatgctagcacatacaccacagcagaaggga
tggcctatgtatgcgcagctactgattgacttattcaaatatttagcaccttttcttagg
aacgtggaactcaccaaacctatgcaaatcctctacaagggtactctaagagtgctgctg
gttcttttgcatgatttcccagagttcctctgtgattaccattatgggttctgtgatgtg
atcccacccaattgtatccagttaagaaatttgatcctgagtgccttccccagaaacatg
aggctcccagacccattcactcctaatctgaaggtggacatgttgagtgaaattaacatc
gctccccggattcttaccaatttcactggagtgatgccacctcagttcaaaaaggatttg
gattcttaccttaaaactcgatcaccagtcacttttctctctgatctgcgcagcaatcta
caggtatccaatgagcctggcaatcgctacaacctccagctcatcaatgcactggtgctc
tatgtagggactcaggccattgcacatatccacaacaaaggcagcacaccttcaatgagt
accatcacccactcagcacacatggacatcttccagaacctagctgtggacttagataca
gagggccggtatctcttcttgaatgcaattgcaaatcagctgcggtaccccaacagccac
actcattacttcagctgcaccatgctgtacctttttgcagaggccaacactgaagctatc
caggaacagatcacaagggttctcttggaacggttgattgtaaataggccacatccttgg
ggtcttcttattaccttcattgagctgattaaaaatccagcgtttaagttctggaaccat
gaatttgtacactgtgccccagaaatcgaaaagttattccagtcagttgcacagtgctgc
atgggacagaagcaggctcagcaagtaatggaaggaacaggtgccagttag
DBGET
integrated database retrieval system
