Perognathus longimembris pacificus (Pacific pocket mouse): 125361658
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Entry
125361658 CDS
T08928
Symbol
Capn1
Name
(RefSeq) calpain-1 catalytic subunit
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04141
Protein processing in endoplasmic reticulum
plop04210
Apoptosis
plop04217
Necroptosis
plop04218
Cellular senescence
plop04382
Cornified envelope formation
plop05010
Alzheimer disease
plop05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125361658 (Capn1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
125361658 (Capn1)
04217 Necroptosis
125361658 (Capn1)
04218 Cellular senescence
125361658 (Capn1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125361658 (Capn1)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
125361658 (Capn1)
05022 Pathways of neurodegeneration - multiple diseases
125361658 (Capn1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
plop01002
]
125361658 (Capn1)
Enzymes [BR:
plop01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
125361658 (Capn1)
Peptidases and inhibitors [BR:
plop01002
]
Cysteine peptidases
Family C2: calpain family
125361658 (Capn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_7
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
125361658
NCBI-ProteinID:
XP_048216189
LinkDB
All DBs
Position
13:58064877..58085940
Genome browser
AA seq
714 aa
AA seq
DB search
MAEEIITPVYCTGVSAQVQKQRAKELGLGRHENAIKYLGQDYEQLRARCLQSGALFRDEA
FPPVPQSLGFKELGPNSSKTYGIKWKRPMELLSNPQFIVDGATRTDICQGALGDCWLLAA
IASLTLNDTLLHRVVPHGQSFQDGYAGIFHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHS
AQGNEFWSALLEKAYAKVNGSYEALSGGSTSEGFEDFTGGVTEWYELRKAPSDLYQIILK
ALERGSLMGCSIDISSVLDMEAVTFKKLVKGHAYSVTGAAQVNYRGQMVSLIRMRNPWGE
VEWTGAWSDGSSEWNNVDPYERERLRIKMEDGEFWMSFRDFLREFTRLEICNLTPDALKS
RTIRNWNTTLYEGTWRRGSTAGGCRNYPATFWVNPQFKIQLEEVDDDDDYGSRESGCSFV
LALMQKHRRRERRYGRDMETIGFAVYEVPPELVGQPAVHLKRDFFLANSSRARSEQFINL
REVSTRFRLPPGEYVVVPSTFEPNKEGDFVLRFFSEKSAGTQELDDQVQANLPDEQVLSE
EEIDENFKALFRQLAGEDLEISVKELQTILNRIISKHKDLRTKGFSLESCRSMVNLMDRD
GNGKLGLVEFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRMAIESAGFKLNKKLYELII
TRYSEPDLAVDFDNFVCCLVRLETMFRFFKTLDTDLDGVVTFDLFKWLQLTMFA
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggagatcatcacgcccgtgtactgcaccggggtgtccgcccaagtgcagaag
cagcgcgccaaggagctgggcctgggccggcacgagaacgccatcaagtacctgggccag
gattacgagcagctgcgagcgcgatgcctgcagagcggggccctgttccgggacgaggcc
ttccccccggtgccccagagcctgggcttcaaggagctgggccccaactcctccaagacc
tacggcatcaagtggaagcggcccatggagctgctgtcgaacccccagtttatagtggat
ggagccacccgcacggacatctgccagggagcgctgggggactgctggctcctggccgcc
atcgcctccctcacgctgaatgacaccctcctgcaccgagtggttccccacggccagagc
ttccaagatggctacgcgggcatcttccatttccagctgtggcagttcggggagtgggtc
gatgtggttgtggatgacctgctgcccaccaaggacggcaagctggtgttcgtgcactct
gcccaaggcaatgagttctggagtgccctgcttgagaaggcctatgccaaggtgaacggc
agctacgaggccctgtcgggaggcagcacctcagagggcttcgaggacttcacgggcggg
gtcaccgagtggtacgagctgcgcaaggcgcccagcgacctctaccagatcatcctcaag
gcactggagcgaggctccctcatgggctgctccatcgatatctccagtgtcctggacatg
gaagccgtcacatttaagaagctggtgaagggccacgcgtactcagtgaccggggccgcg
caggtgaactaccggggccagatggtgagcctgatccggatgcggaacccctggggcgag
gtggagtggacgggagcctggagtgacggctcctccgagtggaataacgtggacccctat
gaacgggagcggctgaggatcaagatggaagatggggagttctggatgtccttccgagat
ttcctgcgggagttcacccgcctggagatctgcaacctgacgccggacgccctcaagagc
cggaccatccggaactggaacaccacgctgtacgagggcacgtggcggcgggggagcacc
gcgggcggctgccggaactacccagccaccttctgggtgaacccccagttcaagatacag
ctggaggaggtggatgacgacgacgactacgggagtcgagagtccggctgcagcttcgtg
ctggctctcatgcagaagcaccgccggcgcgagcgccgctacggccgcgacatggagacc
atcggcttcgccgtctatgaggtccccccggagctggtgggccagccggccgtgcacttg
aagcgagacttcttcctggccaactcgtcccgggcgcgctcggagcagttcatcaacctg
cgggaggtcagcacccgcttccgcctgccccccggggagtacgtggtggtgccctccacc
ttcgagcccaacaaggagggcgacttcgtgctgcgcttcttctcggagaagagtgccggg
acccaggagctggatgaccaggtccaggccaaccttcctgatgagcaagtgctctctgaa
gaggagatcgatgagaacttcaaggcgctgttcaggcagctggcgggggaggacctggag
atcagcgtcaaggagctgcagaccatcctcaacagaatcatcagcaaacacaaagacctg
cggactaaaggcttcagcctggagtcgtgccgcagcatggtgaacctcatggaccgcgac
ggcaacgggaagctgggcctggtcgagttcaacatcctgtggaaccgcatccggaattac
ctgtccatcttccggaagttcgacctggacaagtcggggagcatgagtgcctacgagatg
cggatggccatcgagtctgccggcttcaagctcaacaagaagctgtacgagctcatcatc
acccgctactcggagcccgacctggctgttgacttcgacaacttcgtgtgctgcctggtg
cggctggagaccatgttccggttcttcaaaactctggacacagatctggatggagtcgtg
actttcgacctgtttaagtggttacagctgaccatgtttgcatga
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integrated database retrieval system
