Perognathus longimembris pacificus (Pacific pocket mouse): 125363166
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Entry
125363166 CDS
T08928
Symbol
Abcd4
Name
(RefSeq) lysosomal cobalamin transporter ABCD4 isoform X1
KO
K05678
ATP-binding cassette, subfamily D (ALD), member 4 [EC:
7.6.2.8
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop02010
ABC transporters
plop04146
Peroxisome
plop04977
Vitamin digestion and absorption
plop04980
Cobalamin transport and metabolism
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
125363166 (Abcd4)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
125363166 (Abcd4)
09150 Organismal Systems
09154 Digestive system
04977 Vitamin digestion and absorption
125363166 (Abcd4)
04980 Cobalamin transport and metabolism
125363166 (Abcd4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125363166 (Abcd4)
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
plop02000
]
125363166 (Abcd4)
Enzymes [BR:
plop01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.8 ABC-type vitamin B12 transporter
125363166 (Abcd4)
Membrane trafficking [BR:
plop04131
]
Endosome - Lysosome transport
Others
Lysosomal membrane proteins
125363166 (Abcd4)
Transporters [BR:
plop02000
]
ABC transporters, eukaryotic type
ABCD (ALD) subfamily
ABCD4 subgroup
125363166 (Abcd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane_2
ABC_tran
SbmA_BacA
AAA_16
AAA_22
DEAD
AAA_30
IRK
NACHT
DLIC
ATP-synt_ab
CoV_E
Motif
Other DBs
NCBI-GeneID:
125363166
NCBI-ProteinID:
XP_048218188
LinkDB
All DBs
Position
14:complement(41103862..41118325)
Genome browser
AA seq
606 aa
AA seq
DB search
MAVPGPAPGAGARPRLDLQFLQRFLRIQKVLFPSWPSQNVLMFLTLLCVTLLEQLVIYQV
GVIPSQYYRVLGNKDLDGFKALTFLAVVFIVLNSILKSFDQFTCNLLYVSWRKDLTEHLH
RLYFRARVYYTLNVLQDDIDNPDQRISQDVERFCRQLSSMASKLIVSPFTLIYYTYQCFQ
STGWLGPVSIFGYFILGTMVNKTLMGPIVAKLVQQEKLEGDFRFKHMQIRVNAEPAAFYR
AGHVEHMRTDRRLQRLLQTQRELMSKELWLYIGVNTFDYLGSILSYVVIAIPIFSGVYGD
LSPTELSTLVSKNAFVCMYLINCFTRLIDLSTTFSDVAGYTHRIGELQEALLDMSQKSQD
CETLSKTEWGLDKACGWPAAEPADTAFLLERVSISAPSSDKPLVKDLSLKICEGQSLLIM
GNTGTGKTSLLRVLGGLWASMRGSVQMLTDFGPHGVLFLPQRPFFTDGTLREQVIYPLKE
IYPDSGSTDDERIMRFLELTGLSSLVARTEGLDQQVDWNWYDVLSPGEMQRLSFARLFYL
QPKYAVLDEATSALTEEVESELYRIGQQLGMTFISVGHRPNLEKFHSWVLKLHGGGRWEL
TRIKVE
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcggtccctgggcccgcgcccggagcaggcgctaggcctagactagatctgcaattt
ctccagcggttcctgagaatacagaaggttttgtttccttcttggccatcacagaatgtc
ttgatgttcctgactctcttgtgtgtgaccctactggaacaactggtgatctaccaggtt
ggagtgatccccagtcagtactacagggtcctgggaaacaaagacttggatgggtttaag
gcgctgacattcctggctgttgtgttcatcgttctcaactccatactgaagagctttgac
cagttcacctgcaacctgctgtatgtgagctggaggaaggacctcactgagcacctgcac
cgcctctactttcgggcccgtgtgtactacaccctcaatgtgcttcaggatgacatcgat
aatccggatcagcgtatcagccaggatgtggagcgattctgccggcagctcagcagcatg
gcaagcaagctgattgtctcccccttcaccctcatctactacacataccagtgcttccaa
agcacaggctggcttgggccagtgagcatcttcgggtatttcatcctgggaaccatggtg
aacaaaaccctgatgggacccattgtggcgaagctggtgcagcaggagaagctggagggg
gactttaggttcaagcacatgcagattcgggtgaatgctgagcctgctgctttctacaga
gccgggcacgtggagcacatgaggacagaccgcaggctgcagagactcctgcagacccag
agggagctgatgtccaaggaactctggctatacattggtgtcaacacctttgactatctg
ggcagcatcctgagttacgttgtcattgcaatccccatcttcagcggggtctatggagac
ctgagccccacagagctcagcaccctggtcagcaagaatgcctttgtgtgcatgtacctc
atcaactgcttcacccgcctcatcgacctctccaccacattctcagatgtggctggttac
acacaccggatcggggagcttcaggaggccctgctggacatgtctcagaagtcacaggac
tgcgagaccctgagcaagaccgagtggggcttggacaaggcctgtgggtggccagcagca
gagccagcagacacagctttcctccttgaacgggtctccatctctgccccctcctctgac
aagcccctagtcaaggacctgagcctgaagatctgcgaggggcagagcctgctgatcatg
ggcaacacgggcactggcaagacttccttgctgcgagttctgggcggcctgtgggccagc
atgaggggctccgtgcagatgctgactgacttcgggccccacggagtgctgttcctgcct
cagaggcccttcttcactgacggaacacttcgggagcaggtaatatatcccctgaaggag
atctaccctgactcaggttctacggatgacgagaggatcatgaggttcttggagctgaca
ggcctgtccagcttggtggcaaggacagaggggctggaccagcaggtggattggaactgg
tatgatgtcctgtccccaggggagatgcagagactttcctttgcacggctcttctacctg
cagccaaaatatgcagtgctggatgaagctaccagcgccctgacagaggaggtggagagc
gagctctaccgaatcggccagcagctggggatgacattcatcagcgtgggacatcgaccc
aacctggagaagtttcactcctgggttctgaaactccatggaggaggaagatgggaactg
actagaatcaaagtggaatga
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