Perognathus longimembris pacificus (Pacific pocket mouse): 125364206
Help
Entry
125364206 CDS
T08928
Symbol
Smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plop03036
]
125364206 (Smchd1)
03400 DNA repair and recombination proteins [BR:
plop03400
]
125364206 (Smchd1)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
125364206 (Smchd1)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
125364206 (Smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
125364206
NCBI-ProteinID:
XP_048219623
LinkDB
All DBs
Position
15:3250082..3388186
Genome browser
AA seq
1998 aa
AA seq
DB search
MAAEGANGPSVEAGEAGGGDGGRTVYLFDRREKNSELGDRELQVDERADFAGFRASVCQT
IGISSEEKFVITTTSRKEITQDNFDDIVKDGVTLYLLQSVNQLLPAATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNVDIRRIQIKLLFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHNLIVEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEKR
TSKEVGPFNNIDIDISMFEKGKAPKIVNLREIQDDMQTLYINTASDSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFTLDKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTTKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDEERT
VPIAKLDRTVAEKTVRKYVEDEMARLPDRLSVTWPEGDELLPNETRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDLPFRVGVPFNI
PLEFQDEFGHTSQLVTNIQPVLEASGLSLHYEEITKGPNCVIRGVRAKGSINSCQGKNFN
LKVCLPGLKEDSQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVDVLDESDNITVQ
PKLIVQCKFSGGPNLPIYVVDCSSSGTSILTGPVIQVQNIKKDQTLKARIEIPSCKGVLP
VEKTIKLLPSSHVAQLQIFSIEGQKAIQIKHQDEVNWIAGDTMRNLIFQMYDEGGREINI
TATLAEKVKVNWTPEINKENLLQGLLPDVQVPTSIKDKRYCQVSFQDDHVSLESAFTVRP
LPDDPKHLKCELKGGKTVQMGQELQGEVVIIITDQYGNQVPAFSPSSLSALSVAGVGLDS
SNLTTTLQENTQSISVRGIKFIPGPPGNKDLCFAWREFSDFIRVQLISGPPAKLLLIDWP
ELKEAIPVINGRELERPLAVQLCDQWDNPALIPNVKISLIKASSLKLTPSTQQHKTDEKG
RANLGVFLVFASRGEHTIQVKAIYNKNTIQGPVIKLMVLPDPEKPIRLKVKYDKDVSFLA
GDVFTDFIVSVISEDESIIKNINAARISMKMWKLANNMNRPPPNAEIFSCNKIKDNDKEE
GCFCFRDKVIPNKVGTYCIQFAFMMDKVNMLNSEQIIVDVLPNLPMKLVPEIQPATPAVS
NVRSIASRTLVRDLHLSITDNYGNHTGKNLVGTVVATIKGFNEEDIDIPLFIGKVRTLEF
PFVNGSAKITSLVLAENSPGKDSTEYIIIFEPRLSPLSRTLEPYILPFMFYNDVKKQQQM
AALTKEKDQLSKSIIMYRSLFEASKQLLDEMKCQVEEAKLKESQLRHELKTYNIDIPAAQ
QVSYIEAVLKRKIAEQEELKKKPRRSCTLPNYTKGTGDVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHFRNGKLYFKP
IGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCRILGEQIDLLQQYRSAVCKLGSVN
EDLNGQLEYLHTPDMKKKKQELDEQEKSLKLIEQKLGMTPTRKCNDSLHHSPKVEMTECP
IPPKRMRRETTRQNRVNN
NT seq
5997 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggagggcgccaatgggccgtcggtggaggctggggaggctggcggcggggac
ggcggccgaaccgtgtatttgtttgaccggcgggaaaaaaactcggagctcggagaccgc
gagctgcaggtcgacgagcgcgcggacttcgcgggcttccgcgcctccgtgtgtcagaca
attggcatttcatccgaagaaaagtttgttattacaactacaagtaggaaagaaattact
caggataattttgatgacattgttaaagatggagtcactttatacctgttacagtcagtc
aatcagttattaccagcagctacaaaagaacgaattgactttctacctcactatgacaca
cttgttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatccattgccattt
gctcttgcggaattaattgacaattcattgtctgctacttctcgtaatgttgatattaga
agaatacagattaagttgctttttgatgaaacacaaggaaaacctgctgtggcagtgata
gataatggaagaggaatgacctctaaacaacttaacaactgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcgggatatgttcggccagtacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttggtggcaaacaggcagtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagattctcaagatgttcac
gaacttgtgctttctaaagaagattttgagaagaaggaaaaaaataaggaagcaatatat
agtggatatattagaaacagaaagccatctgattctgttcacattacaaacgatgatgaa
agatttctacataatcttattgtagaggaaaaggaaaaagatagttttactgctgtggtc
atcacaggagtacaaccagaacacatacagtacttgaaaaattatttccatctttggaca
cgacaattagcgcatatttatcattactatattcatggcccaaaaggaaatgaaaaacgt
acatcaaaagaagttggacctttcaacaatattgatattgatatttctatgtttgaaaaa
gggaaagcacctaagattgtgaacttaagggaaatacaggatgacatgcagacattgtat
ataaacacagcatctgatagttttgagttcaaggctcacgttgaaggagatggtgtagtg
gaagggattatccgataccatcctttcttatatgacagagaaacttaccctgatgatcca
tgctttccatcaaagttaaaagatgaagatgatgatgatgactgtttcacacttgataaa
gcagcaagaggtaaaagacctatttttgaatgtttttggaatggacgattaataccatat
acatcagttgaagactttgactggtgtactcctcctaagaagagagggcttgcaccaatt
gagtgctacaatagaatatctggtgcattatttacgaatgacaaatttcaagttagtaca
aataaacttacgtttatggatcttgagctgaaattgaaagataagaacaccctttttaca
aggattttaaatggacaggaacagagaatgaaaattgacagagaatttgctttgtggctg
aaggactgtcatgaaaagtatgacaaacagataaaatttacactttttaaaggaataatt
acacgtccagatcttccctctaaaaagcaaggtccctgggcaacatattcagcaatagaa
tgggatggaaaaatatacaaagcagggcagctggtcaagacaaccaagacacttcctctc
ttttatggaagcatagtaagattttttctttatggtgatcatgatggagaagtatatgct
actggaggagaagttcaaattgcaatggaacctcaggcactgtatgatgaagaaagaact
gtgccaatcgcaaaactggataggacagttgctgagaaaactgttagaaaatatgtggaa
gatgaaatggcaaggctcccagatagattatcagtaacttggccagaaggagatgaatta
ttgcctaatgaaactaggccggctggaacccccattggtgccttaagaattgaaatcttg
aataaaaagggggaagcgatgcaaaagcttccaggaacaagtcatggaggatcaaagaaa
ctactggttgagcttaaggttatattgcactcttcaagtgggaataaagaaatcatttca
catatcagtcaacatggaggaaaatggccgtactggtttaaaaaaatggaaaatatccaa
aagttggggaattacacattgaaattacaagttgtattgaatgaaagcaatgcagacacc
tatgcaggaagaccactcccatctaaagcaattaaattttctgttaaagagggcaagccc
gagaaattttcttttggtcttctggatcttccttttcgtgttggggttccgttcaatatc
cctttggagtttcaggatgaatttggtcatactagccaactagtaactaatattcagcca
gttcttgaagcaagtggtttatctttacattatgaagaaataaccaaaggacccaattgt
gtaattcgaggtgttagagctaagggctctataaactcttgtcaaggcaagaattttaac
ttgaaggtttgtctgccgggtttgaaagaagactctcagattttgaaaattagactacta
cctggtccccctcatcgattaaaagtcaagcctgattctgaaattttggttatagaaaat
gggacagctttcccatttcaggtggacgttctagatgaatcagacaacataacagtgcaa
ccaaaactgatcgttcaatgtaagttttcaggtggtccaaaccttccaatttacgttgtg
gattgtagtagctctggaactagtattttaacgggacctgtaattcaagttcagaatatt
aaaaaggaccagacacttaaagcaagaattgaaatacctagttgtaaaggtgtgttacca
gtggaaaaaactattaaattgcttcccagtagccatgttgcacaactacagatattcagt
atagagggacaaaaggcaattcagatcaaacatcaagatgaggttaattggatagcaggt
gatactatgcgtaatcttatttttcaaatgtatgatgaaggaggaagagaaataaatata
acagcgactttagcagaaaaagttaaggttaattggactcctgagattaacaaagaaaac
ttactacagggtctacttcctgatgtacaagtaccaacatctataaaagataagcgctac
tgccaggtctcattccaagatgatcatgtatctttggaaagtgcatttacagtaagacca
cttcctgatgacccaaaacatttaaaatgtgagttaaaaggaggaaaaacagtgcagatg
ggccaagagcttcaaggagaagtagttataatcattacagatcagtatggaaatcaggta
ccagcattttcaccaagttctttgtctgccttatcagttgctggggttggacttgatagc
tcaaatttgacaactactttgcaggaaaacacacaaagtataagtgtaagaggcataaaa
tttattccaggccctcctggaaataaggacctttgttttgcatggcgtgagttttctgac
tttattcgagtgcagctaatttctggacctcctgctaaacttctcctgatagactggcca
gaattaaaagaggctattccagtgattaatggaagagagttagagcgccctcttgctgtt
caactttgtgatcagtgggacaatccagcactaataccaaatgtaaaaataagtctcata
aaagctagcagtttaaagctcacaccttcaacccagcaacataaaacagatgagaaaggc
agggctaatttgggagtgttccttgtttttgcctctaggggagaacatactatccaagtt
aaagccatctataacaagaatacaatacaaggacctgtaattaagttaatggttcttcca
gaccctgaaaaacccattcgtctcaaggttaaatatgacaaagatgtttcctttttagca
ggggatgttttcactgattttatagttagtgttatttctgaagatgaaagtatcatcaaa
aatattaacgcagcacgtatttcaatgaaaatgtggaagctggctaacaatatgaatcga
ccacctccaaatgcagaaatatttagttgtaataaaataaaagataatgacaaggaagaa
ggctgcttctgtttcagggataaagttattcctaacaaagtgggaacatattgtatccag
tttgcttttatgatggataaagtaaatatgctcaacagcgaacagattatagttgatgtc
ctgcctaatctgcctatgaagttggttcctgaaatccaaccagctactcccgctgtttct
aatgttcggtctattgccagtaggactttggtcagagacttgcatctcagtattacggat
aattatggcaatcatacaggaaagaatctggttggcactgtggtagctaccattaaaggt
tttaatgaggaggatatagatataccactcttcattgggaaagttagaacacttgagttt
ccttttgtgaatggttcagctaaaatcacaagtttagtgctggcagaaaatagtcctgga
aaggatagtactgaatatattattatttttgagcctcggttatcacctttgtcaagaaca
ttagagccgtacatactaccatttatgttttataacgatgtgaagaagcagcaacaaatg
gcagcacttacaaaagaaaaggaccaattatctaagtctattattatgtatagaagtcta
tttgaagccagcaaacagcttcttgatgaaatgaaatgccaagtggaagaagcaaagtta
aaagagtcccagttgagacatgaattgaaaacatataacattgatattcctgcagcacaa
caggtttcatacattgaagcagttttgaaaagaaagatagcagaacaggaagaactaaag
aaaaaaccccgaagatcatgcacactcccaaattatactaaaggcactggagatgttttg
ggaaagattgcacatcttgcacaaattgaagatgatagagctgcaatggttatttcctgg
catctggcaagtgacatggactgtgtggtcaccctgaccactgatgctgcacgtcgtata
tatgatgaaactcagggtcgtcaacaggtgttaccccttgattctatttataagaagact
ttgccggattggaaaagacctctacctcatttccgaaatggaaaattatattttaaaccc
attggagatccagtttttgcccgagacttgttaacatttccagataatgtagaacattgt
gaaacagtatttggtatgctgttaggagacaccattattttggataacctggatgcagcc
aatcattatagaaaagaggttgttaaaatcactcattgccccacactactgaccagagat
ggagatcgaattcgaagtaacggaaaatttggaggacttcagaataaagctcctccaatg
gataaacttcgaggaatggtgtttggagctccaataccaaaacagtgcaggattttaggg
gaacaaatagatcttcttcagcaatatcgctcagccgtgtgcaagctgggtagtgtgaat
gaggacctcaatggtcagttagagtaccttcacactcctgatatgaagaagaaaaagcaa
gaacttgatgaacaagaaaaaagtttgaaactcatagagcaaaaacttggtatgactcct
acacgtaagtgtaatgattctttgcatcattcaccaaaagttgagatgactgaatgccca
attcctcctaaaagaatgagaagagaaactacaagacagaatagggttaataactaa
DBGET
integrated database retrieval system
